BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0030.p (307 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 102 1e-21 STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 100 3e-21 RSc1234 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 95 2e-19 RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 89 1e-17 RSc1950 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 89 1e-17 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/197 (35%), Positives = 106/197 (53%), Gaps = 6/197 (3%) Query: 102 KIEPRLSSEDEKALFKEIIAARNKYQAAKELVMNTRKTGDGAAAEKAYKDVFEPASKAYA 161 ++E L+++ KALFKE AR+ Y A+ + A Y+ Y Sbjct: 101 RLEKLLTTDQGKALFKEQFDARSAYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYY 160 Query: 162 DKVNALLAMQRKAIDQMAVDIDRSSTHGMQL---MMTLGVLLVLISVVAVLIISRSITTP 218 V+ ++ Q +M D+ ++ G M+ L VL L+++ I+R+IT P Sbjct: 161 VLVDKMVDHQ---AGEMEHDVSEAAAQGANAKIQMIVLAVLATLLAIATGAFITRTITRP 217 Query: 219 LKRALEVAKMVAAGDLTASIEKHGKDEIAELMQALDEMNTGLRKIVSEVQVGTDSISTAA 278 + A+ +A+ VA G+LT +E +DEI L+ AL M L IVS+V+ GTD+I+ A+ Sbjct: 218 INHAMHLAEAVAQGNLTHLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRAS 277 Query: 279 NEIASGNFDLSSRTEQQ 295 +E+ASGN DLSSRTEQQ Sbjct: 278 SEVASGNIDLSSRTEQQ 294 >STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 521 Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 144/295 (48%), Gaps = 6/295 (2%) Query: 4 LSSMRISSRLIFGFAIVLILATISTSIGLINARRNAEATRAMM--ELPLA-KERLVADWF 60 L +++I S+L F + ++L +S+++ L + R + ++ + P K L+ D F Sbjct: 3 LHNIKIRSKLFMAFGLFIVLMVVSSALSLFSLDRANTGMQNIITNDYPTTVKANLLIDNF 62 Query: 61 VLTYSAIVRTSMIARSSDANLADTFKEAIAASVVSGSGIIKKIEPRLSSEDEKALFKEII 120 I+ ++ + + + ++ + + ++ ++ + + EI Sbjct: 63 ---NDFIIAQQLMLLDEEGRWSQSSQKELDEISQRITALLDELSSNRHDAASQKIITEIR 119 Query: 121 AARNKYQAAKELVMNTRKTGDGAAAEKAYKDVFEPASKAYADKVNALLAMQRKAIDQMAV 180 AR +Y ++ ++ ++ + AA + K Y DKV L+A+Q + V Sbjct: 120 EARQQYLESRFRILQDIQSHNRQAAIQEMMTRTVQVQKVYKDKVQELIAVQDAQMHNAGV 179 Query: 181 DIDRSSTHGMQLMMTLGVLLVLISVVAVLIISRSITTPLKRALEVAKMVAAGDLTASIEK 240 ++ L++TL ++ + V I RSIT PL A+ A+ +A GDLT I Sbjct: 180 QVEGDFKTNRTLLITLALISIAAGCVMGWYIVRSITRPLDEAVRFAEAIADGDLTRHITT 239 Query: 241 HGKDEIAELMQALDEMNTGLRKIVSEVQVGTDSISTAANEIASGNFDLSSRTEQQ 295 KDE L+QAL M T L IV EVQ G++SISTAA +I +GN DL++RTE+Q Sbjct: 240 DYKDETGVLLQALMAMKTRLLDIVQEVQNGSESISTAAAQIVAGNQDLAARTEEQ 294 >RSc1234 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 514 Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 47/93 (50%), Positives = 66/93 (70%) Query: 203 ISVVAVLIISRSITTPLKRALEVAKMVAAGDLTASIEKHGKDEIAELMQALDEMNTGLRK 262 + + + SRSIT PL RA+EVA+ VA GDL ++ E G DEIA+L+ AL EM L K Sbjct: 196 LGLAGAFLFSRSITRPLSRAVEVARTVAQGDLGSAFEARGSDEIAQLLIALREMQGSLAK 255 Query: 263 IVSEVQVGTDSISTAANEIASGNFDLSSRTEQQ 295 +VSEV+ + +++A+ +IASGN +LSSRTE+Q Sbjct: 256 VVSEVRRNAEGVASASAQIASGNLNLSSRTEEQ 288 >RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 608 Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 151/308 (49%), Gaps = 35/308 (11%) Query: 6 SMRISSRLIFGFAIVLILATISTSIGLINARRNAEATRAMMELPLAKERLVA--DWFVLT 63 M I RL A V +LA + + GL+ R +A E+ LA +A D +L+ Sbjct: 4 GMTIRLRLALMMAGVAVLAVVIGTTGLLGMRHANTRVQATYEMQLAGAVALAESDASMLS 63 Query: 64 YSAIV-RTSMIARSSDANLADTFKEA---IAASVVSGSGIIKKIEPRLSSEDEKALFKEI 119 + ++ R +M ++ +L T + A +A S S K+ S+ DE+ L E Sbjct: 64 FRLVLDRAAMDIKAP--SLGKTLERARMFLAKSDAS----WKRYRALPSTPDERKLADEA 117 Query: 120 IAARNKY-QAAKELVMNTRKTGDGAAAEKAYKDVFE--PA-SKAYADKVNALLAMQRKAI 175 A R + + + +M + GD AE+ + V E PA + DKV AL MQ Sbjct: 118 DALRTVFLRDGAQALMQAIQAGD---AERTSQTVMEAMPALYRPLGDKVTALSRMQ---- 170 Query: 176 DQMAVDIDRSS------THGMQLMMTLGVLLVLISVVAVLIIS--RSITTPLKRALEVAK 227 ++I R+S H +T +LLV I +L S RSIT PL RA+E A+ Sbjct: 171 ----MEIARASYEAGQREHDGLSALTAALLLVGIVGGGLLTWSLRRSITVPLNRAIEQAE 226 Query: 228 MVAAGDLTASIEKHGKDEIAELMQALDEMNTGLRKIVSEVQVGTDSISTAANEIASGNFD 287 + GDLT +I DE ++ AL M L+ +V +V+ G+D+I++A +IA+GN D Sbjct: 227 HITRGDLTHAIHVDRADETGRMLLALQRMQESLQGMVGQVRTGSDAIASATQQIAAGNAD 286 Query: 288 LSSRTEQQ 295 LS RTEQQ Sbjct: 287 LSQRTEQQ 294 >RSc1950 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 329 Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/110 (44%), Positives = 74/110 (67%), Gaps = 2/110 (1%) Query: 188 HGMQ--LMMTLGVLLVLISVVAVLIISRSITTPLKRALEVAKMVAAGDLTASIEKHGKDE 245 +G Q L++ L + VL+++ A ++I+RSIT P+ +A+ VA+ VA GDL + I+ G DE Sbjct: 75 YGQQRSLLIALSIAAVLVAIGAGVLITRSITRPIGKAVNVAETVARGDLGSRIDAEGTDE 134 Query: 246 IAELMQALDEMNTGLRKIVSEVQVGTDSISTAANEIASGNFDLSSRTEQQ 295 + + AL +MNT L +IV +V+ + SI+ AA IA+GN DLS RTE Q Sbjct: 135 TSHRLAALADMNTRLTQIVDKVRDSSGSIAGAARPIAAGNADLSQRTEAQ 184