BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0023.p (377 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value XF0252 [LKJ] COG0513 Superfamily II DNA and RNA helicases Xfa Xy... 525 e-148 Cgl1130 [LKJ] COG0513 Superfamily II DNA and RNA helicases Cgl C... 467 e-131 Rv1253 [LKJ] COG0513 Superfamily II DNA and RNA helicases Mtu My... 452 e-127 MT1292 [LKJ] COG0513 Superfamily II DNA and RNA helicases MtC My... 452 e-127 ZdeaD [LKJ] COG0513 Superfamily II DNA and RNA helicases EcZ Esc... 416 e-116 >XF0252 [LKJ] COG0513 Superfamily II DNA and RNA helicases Xfa Xylella fastidiosa 9a5c Length = 614 Score = 525 bits (1351), Expect = e-148, Method: Compositional matrix adjust. Identities = 261/341 (76%), Positives = 298/341 (87%), Gaps = 1/341 (0%) Query: 2 SEAPLPLFSDLNLSEPLLRVLKELGYESPSPIQAATIPILLSNRDVLGQAQTGTGKTAAF 61 S PL LF+DL LS+ +++ + ++GYE+PSPIQAATIP LL+ RDVLGQAQTGTGKTAAF Sbjct: 11 SSTPL-LFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAF 69 Query: 62 ALPILSRIDIRQTVPQALVLAPTRELAIQVAEAFQRYATHIPGFHVLPIYGGQSYGPQLS 121 ALP+L+R + Q PQ LVLAPTRELAIQVAEAFQRYA I GF VLP+YGGQSYG QL+ Sbjct: 70 ALPLLTRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLA 129 Query: 122 ALRRGVHVVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADEMLRMGFIDDVESILQKTPAT 181 AL+RGVHV+VGTPGRVIDHL++G+LDLS+LKT+VLDEADEMLRMGFI+DVE +L+K PA+ Sbjct: 130 ALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPAS 189 Query: 182 RQTTLFSATMPSAIKRIAQTYLRDPAEVTIAAKTGTAENIRQRYWLVSGMHKLDALTRIL 241 RQ LFSATMP I+RIAQTYL+DP EVTIA KT TA NIRQRYW VSG+HKLDALTRIL Sbjct: 190 RQVALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRIL 249 Query: 242 EVEPFDGLIIFSRTKLGTEELAGKLKARGFAAAAINGDIQQQQRERTIQQLKDGQIDILI 301 EVE FD +IIF RTK TEELA KL+ARG AAAINGD+QQ QRERTI QLKDG++DIL+ Sbjct: 250 EVETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILV 309 Query: 302 ATDVAARGLDVERISHVINYDVPYDPESYTHRIGRTGRAGR 342 ATDVAARGLDVERISHV+NYD+PYD ESY HRIGRTGRAGR Sbjct: 310 ATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGR 350 >Cgl1130 [LKJ] COG0513 Superfamily II DNA and RNA helicases Cgl Corynebacterium glutamicum Length = 732 Score = 467 bits (1202), Expect = e-131, Method: Compositional matrix adjust. Identities = 223/334 (66%), Positives = 276/334 (82%) Query: 9 FSDLNLSEPLLRVLKELGYESPSPIQAATIPILLSNRDVLGQAQTGTGKTAAFALPILSR 68 F L L E +L ++++GYE+PSPIQA TIPIL+ +DV+G AQTGTGKTAAFALPIL+R Sbjct: 104 FDALGLPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILAR 163 Query: 69 IDIRQTVPQALVLAPTRELAIQVAEAFQRYATHIPGFHVLPIYGGQSYGPQLSALRRGVH 128 ID PQALVLAPTRELA+QVA++FQ +A H+ G +VLPIYGGQ+YG QLS LRRG H Sbjct: 164 IDKSVRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRRGAH 223 Query: 129 VVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADEMLRMGFIDDVESILQKTPATRQTTLFS 188 +VVGTPGR+IDHL+KGSLD+S L+ +VLDEADEML MGF +DVE IL+ TP +Q LFS Sbjct: 224 IVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALFS 283 Query: 189 ATMPSAIKRIAQTYLRDPAEVTIAAKTGTAENIRQRYWLVSGMHKLDALTRILEVEPFDG 248 ATMP+ I+R+++ YL +PAE+T+ ++T T NI QR+ V+ +K+DALTRILEV F+ Sbjct: 284 ATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALTRILEVTEFEA 343 Query: 249 LIIFSRTKLGTEELAGKLKARGFAAAAINGDIQQQQRERTIQQLKDGQIDILIATDVAAR 308 +I+F RTK TEE+A KL+ARGF+AAAINGDI Q QRERT+ QLKDG++DIL+ATDVAAR Sbjct: 344 MIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 403 Query: 309 GLDVERISHVINYDVPYDPESYTHRIGRTGRAGR 342 GLDVERISHV+N+D+P D ESY HRIGRTGRAGR Sbjct: 404 GLDVERISHVLNFDIPNDTESYVHRIGRTGRAGR 437 >Rv1253 [LKJ] COG0513 Superfamily II DNA and RNA helicases Mtu Mycobacterium tuberculosis H37Rv Length = 563 Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/334 (66%), Positives = 268/334 (80%), Gaps = 2/334 (0%) Query: 9 FSDLNLSEPLLRVLKELGYESPSPIQAATIPILLSNRDVLGQAQTGTGKTAAFALPILSR 68 F+DL + +LR + ++GYESP+ IQAATIP L++ DV+G AQTGTGKTAAFA+P+LS+ Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74 Query: 69 IDIRQTVPQALVLAPTRELAIQVAEAFQRYATHIPGFHVLPIYGGQSYGPQLSALRRGVH 128 IDI VPQALVL PTRELA+QVAEAF RY ++ +VLPIYGG SY QL+ LRRG Sbjct: 75 IDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQ 134 Query: 129 VVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADEMLRMGFIDDVESILQKTPATRQTTLFS 188 VVVGTPGR+IDHL++ +LDLS++ +VLDEADEML MGF DDVE IL +TP +Q LFS Sbjct: 135 VVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFS 194 Query: 189 ATMPSAIKRIAQTYLRDPAEVTIAAKTGTAENIRQRYWLVSGMHKLDALTRILEVEPFDG 248 ATMP AI++++ YL DP EVT AKT AENI Q Y V+ K+DALTR+LEVEPF+ Sbjct: 195 ATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFEA 252 Query: 249 LIIFSRTKLGTEELAGKLKARGFAAAAINGDIQQQQRERTIQQLKDGQIDILIATDVAAR 308 +I+F RTK TEE+A KL+ARGF+AAAI+GD+ Q QRERTI L+DG IDIL+ATDVAAR Sbjct: 253 MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAAR 312 Query: 309 GLDVERISHVINYDVPYDPESYTHRIGRTGRAGR 342 GLDVERISHV+NYD+P+D ESY HRIGRTGRAGR Sbjct: 313 GLDVERISHVLNYDIPHDTESYVHRIGRTGRAGR 346 >MT1292 [LKJ] COG0513 Superfamily II DNA and RNA helicases MtC Mycobacterium tuberculosis CDC1551 Length = 563 Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/334 (66%), Positives = 268/334 (80%), Gaps = 2/334 (0%) Query: 9 FSDLNLSEPLLRVLKELGYESPSPIQAATIPILLSNRDVLGQAQTGTGKTAAFALPILSR 68 F+DL + +LR + ++GYESP+ IQAATIP L++ DV+G AQTGTGKTAAFA+P+LS+ Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74 Query: 69 IDIRQTVPQALVLAPTRELAIQVAEAFQRYATHIPGFHVLPIYGGQSYGPQLSALRRGVH 128 IDI VPQALVL PTRELA+QVAEAF RY ++ +VLPIYGG SY QL+ LRRG Sbjct: 75 IDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQ 134 Query: 129 VVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADEMLRMGFIDDVESILQKTPATRQTTLFS 188 VVVGTPGR+IDHL++ +LDLS++ +VLDEADEML MGF DDVE IL +TP +Q LFS Sbjct: 135 VVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFS 194 Query: 189 ATMPSAIKRIAQTYLRDPAEVTIAAKTGTAENIRQRYWLVSGMHKLDALTRILEVEPFDG 248 ATMP AI++++ YL DP EVT AKT AENI Q Y V+ K+DALTR+LEVEPF+ Sbjct: 195 ATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFEA 252 Query: 249 LIIFSRTKLGTEELAGKLKARGFAAAAINGDIQQQQRERTIQQLKDGQIDILIATDVAAR 308 +I+F RTK TEE+A KL+ARGF+AAAI+GD+ Q QRERTI L+DG IDIL+ATDVAAR Sbjct: 253 MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAAR 312 Query: 309 GLDVERISHVINYDVPYDPESYTHRIGRTGRAGR 342 GLDVERISHV+NYD+P+D ESY HRIGRTGRAGR Sbjct: 313 GLDVERISHVLNYDIPHDTESYVHRIGRTGRAGR 346 >ZdeaD [LKJ] COG0513 Superfamily II DNA and RNA helicases EcZ Escherichia coli O157:H7 EDL933 Length = 646 Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/334 (60%), Positives = 253/334 (75%) Query: 9 FSDLNLSEPLLRVLKELGYESPSPIQAATIPILLSNRDVLGQAQTGTGKTAAFALPILSR 68 F+DL L P+L L +LGYE PSPIQA IP LL+ RDVLG AQTG+GKTAAF+LP+L Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84 Query: 69 IDIRQTVPQALVLAPTRELAIQVAEAFQRYATHIPGFHVLPIYGGQSYGPQLSALRRGVH 128 +D PQ LVLAPTRELA+QVAEA ++ H+ G +V+ +YGGQ Y QL ALR+G Sbjct: 85 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 144 Query: 129 VVVGTPGRVIDHLDKGSLDLSQLKTMVLDEADEMLRMGFIDDVESILQKTPATRQTTLFS 188 +VVGTPGR++DHL +G+LDLS+L +VLDEADEMLRMGFI+DVE+I+ + P QT LFS Sbjct: 145 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 204 Query: 189 ATMPSAIKRIAQTYLRDPAEVTIAAKTGTAENIRQRYWLVSGMHKLDALTRILEVEPFDG 248 ATMP AI+RI + ++++P EV I + T +I Q YW V GM K +AL R LE E FD Sbjct: 205 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 264 Query: 249 LIIFSRTKLGTEELAGKLKARGFAAAAINGDIQQQQRERTIQQLKDGQIDILIATDVAAR 308 IIF RTK T E+A L+ G+ +AA+NGD+ Q RE+T+++LKDG++DILIATDVAAR Sbjct: 265 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 324 Query: 309 GLDVERISHVINYDVPYDPESYTHRIGRTGRAGR 342 GLDVERIS V+NYD+P D ESY HRIGRTGRAGR Sbjct: 325 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 358