BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0021.p         (87 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2239 [J] COG0361 Translation initiation factor 1 (IF-1) Rso R...   104   4e-23
CC2343 [J] COG0361 Translation initiation factor 1 (IF-1) Ccr Ca...   103   6e-23
VC1737 [J] COG0361 Translation initiation factor 1 (IF-1) Vch Vi...   102   1e-22
infA [J] COG0361 Translation initiation factor 1 (IF-1) Eco Esch...   102   2e-22
ZinfA [J] COG0361 Translation initiation factor 1 (IF-1) EcZ Esc...   102   2e-22

>RSc2239 [J] COG0361 Translation initiation factor 1 (IF-1) Rso Ralstonia
          solanacearum
          Length = 72

 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 59/71 (83%)

Query: 1  MAKEELLEMNGLVEEVLPDSRFRVNLENGHRLIAYTSGKMRQNHIRILAGDKVTLELSPY 60
          MAKEEL+E  G+V E LPD+RFRV LENG  + AY SGKM+++ IRILAGD+V LE+SPY
Sbjct: 1  MAKEELIEFEGVVSEALPDNRFRVQLENGVEVWAYASGKMQKHRIRILAGDRVKLEMSPY 60

Query: 61 DLSKGRITFRH 71
          DL+KGRI +RH
Sbjct: 61 DLTKGRINYRH 71


>CC2343 [J] COG0361 Translation initiation factor 1 (IF-1) Ccr
          Caulobacter vibrioides
          Length = 72

 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 60/70 (85%)

Query: 1  MAKEELLEMNGLVEEVLPDSRFRVNLENGHRLIAYTSGKMRQNHIRILAGDKVTLELSPY 60
          MAKEELLE  G V E+LP++ FRV LEN H +IA+T+GKMR+N IR+LAGDKV +E++PY
Sbjct: 1  MAKEELLEFPGTVSELLPNATFRVKLENDHEIIAHTAGKMRKNRIRVLAGDKVLVEMTPY 60

Query: 61 DLSKGRITFR 70
          DL+KGRIT+R
Sbjct: 61 DLTKGRITYR 70


>VC1737 [J] COG0361 Translation initiation factor 1 (IF-1) Vch Vibrio
          cholerae
          Length = 72

 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 59/70 (84%)

Query: 1  MAKEELLEMNGLVEEVLPDSRFRVNLENGHRLIAYTSGKMRQNHIRILAGDKVTLELSPY 60
          MAKE+++EM G V + LP++ FRV LENGH + A+ SGKMR+N+IRIL GDKVT+E++PY
Sbjct: 1  MAKEDVIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVEMTPY 60

Query: 61 DLSKGRITFR 70
          DLSKGRI FR
Sbjct: 61 DLSKGRIVFR 70


>infA [J] COG0361 Translation initiation factor 1 (IF-1) Eco
          Escherichia coli K12
          Length = 72

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 58/70 (82%)

Query: 1  MAKEELLEMNGLVEEVLPDSRFRVNLENGHRLIAYTSGKMRQNHIRILAGDKVTLELSPY 60
          MAKE+ +EM G V E LP++ FRV LENGH + A+ SGKMR+N+IRIL GDKVT+EL+PY
Sbjct: 1  MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPY 60

Query: 61 DLSKGRITFR 70
          DLSKGRI FR
Sbjct: 61 DLSKGRIVFR 70


>ZinfA [J] COG0361 Translation initiation factor 1 (IF-1) EcZ
          Escherichia coli O157:H7 EDL933
          Length = 72

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 58/70 (82%)

Query: 1  MAKEELLEMNGLVEEVLPDSRFRVNLENGHRLIAYTSGKMRQNHIRILAGDKVTLELSPY 60
          MAKE+ +EM G V E LP++ FRV LENGH + A+ SGKMR+N+IRIL GDKVT+EL+PY
Sbjct: 1  MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPY 60

Query: 61 DLSKGRITFR 70
          DLSKGRI FR
Sbjct: 61 DLSKGRIVFR 70