BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0014.p (538 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2040 [E] COG0559 Branched-chain amino acid ABC-type transport... 466 e-131 YPO1188 [E] COG0559 Branched-chain amino acid ABC-type transport... 434 e-121 SMb20604 [E] COG0559 Branched-chain amino acid ABC-type transpor... 430 e-120 AGc4379 [E] COG0559 Branched-chain amino acid ABC-type transport... 417 e-116 PA4859 [E] COG0559 Branched-chain amino acid ABC-type transport ... 379 e-104 >RSc2040 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Rso Ralstonia solanacearum Length = 538 Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust. Identities = 284/511 (55%), Positives = 346/511 (67%), Gaps = 14/511 (2%) Query: 33 LKPLAGDDPDARIAAVTQIAALANADAQKILNAINSDALYATPAGDVLIIE-----DSDA 87 LKPLA DD DA++ + +AA A IL A+ +DAL+ PA +L E D+ + Sbjct: 36 LKPLAEDDFDAKVKVLNALAAAPAEQAGPILRALQNDALFYAPAAGMLRQEGERYLDAIS 95 Query: 88 FNPATDKTGPAPDDAEGITVNNRLRGVVEGALSGLKLFSPDRATRLTAATELLKTADAAQ 147 P K DD + +T+NN LR V+ A SG L SPDRA R A LL + A Sbjct: 96 GQPVAMKA----DDLQALTLNNALRAQVDSAASGFVLQSPDRAVRAQAIDTLLAHPETAS 151 Query: 148 TPLISKALAAEKDPQIQEVLKQVVATANLHAPDAATRKAAVKALAETTNASLKPVLEQML 207 ++ A E DP+++ L + A L A + A++ LA TN + + +L Sbjct: 152 RTVVDAARKQETDPELRTRLHLLWANLALDDGSPAEKLEALRLLAGDTNPQTRQRIAPLL 211 Query: 208 AKNPDGSYVEADEGVRIEAVRTVSALDRHLTITEFVGKLFYGVSLGSVLLLAALGLAITF 267 AK+ AD+ +R A + + L E +G LF G+SLGSVLLLAALGLAIT+ Sbjct: 212 AKDSG-----ADDVLRAAARQALDNLAAQARKAELIGNLFAGLSLGSVLLLAALGLAITY 266 Query: 268 GLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYIVVALPAAFIVAAAVGIALER 327 GL+G+INMAHGE LMIGAY TYV Q +FR FP A D Y+ ALPAAF+ AA VG LER Sbjct: 267 GLIGVINMAHGEFLMIGAYATYVVQTLFRNHFPAAFDWYLPAALPAAFLAAAVVGFVLER 326 Query: 328 LVIRWLYGRPLETLLCTWGISLMLMQAVRSIFGAQNVEVANPSWMSGGITVLGSLVLSYN 387 +V+R LYGRPLETLL T+G+SL+LMQAVRS+FGAQNVEVANPSWMSGGI + L+L YN Sbjct: 327 MVLRHLYGRPLETLLATFGVSLLLMQAVRSVFGAQNVEVANPSWMSGGIALYPGLILPYN 386 Query: 388 RIVIIFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGVSTGKIDMMTFGLGCGIA 447 R+VI+ FAL VV W +LN+TRLGLFVRA TQNR MA CVGV T K+D F G GIA Sbjct: 387 RLVILAFALVVVTLAWAVLNRTRLGLFVRATTQNRAMAACVGVRTWKVDSYAFAFGAGIA 446 Query: 448 GLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAAFGLGEVNKFLEPVAGA 507 GLGG ALSQ+GNVGPDLGQGYI+DSFM VVLGGVGQLAGT++ AFGLG +NK +EP GA Sbjct: 447 GLGGCALSQIGNVGPDLGQGYIIDSFMAVVLGGVGQLAGTIVGAFGLGLINKCIEPFYGA 506 Query: 508 VLAKIAILVFIIVFIQKRPQGLFALKGRSVE 538 VLAKI +LV I++FIQKRPQGLFALKGRS E Sbjct: 507 VLAKIFVLVLIVLFIQKRPQGLFALKGRSAE 537 >YPO1188 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Ype Yersinia pestis Length = 533 Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust. Identities = 260/490 (53%), Positives = 344/490 (70%), Gaps = 11/490 (2%) Query: 48 VTQIAALANADAQKILNAINSDALYATPAGDVLIIEDSDAFNPATDKTGPAPDDAEGITV 107 + Q A +A +L A+ + + AG I +++ + N ++ P + I + Sbjct: 50 LQQWATEPDASRLPLLQALKQETVVVDSAGQAFI-KNNQSINSLEGQSQPT-GTLKKIWL 107 Query: 108 NNRLRGVVEGALSGLKLFSPDRATRLTAATELLKTADAAQTPLISKALAAEKDPQIQEVL 167 NNRLR ++ AL+ +L S D RL AA EL + A + Q PL+++ L E D Q++E L Sbjct: 108 NNRLRILIANALAAQRLVSDDETVRLQAAVELQRQAQSDQLPLLNQRLKLETDSQVKEAL 167 Query: 168 KQVVATANLHAPDA--ATRKAAVKALAETTNASLKPVLEQMLAKNPDGSYVEADEGVRIE 225 +A ANL D+ R AV+ L ++ + + L+ + + VE +E VR Sbjct: 168 S--IALANLQLTDSNPQVRLNAVQLLGQSGSPQTQSRLQSL-----TDTQVEPNEQVRAA 220 Query: 226 AVRTVSALDRHLTITEFVGKLFYGVSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGA 285 A ++ + L I E +G++F G+SLGS+LLLAALGLAIT+GL+G+INMAHGE+LM+GA Sbjct: 221 AATSLKQIQHRLMIGEVIGQVFSGLSLGSILLLAALGLAITYGLLGVINMAHGEMLMLGA 280 Query: 286 YTTYVCQLVFRKFFPGAIDAYIVVALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTW 345 Y+ Y+ Q +F++F P + Y ++ALP AF + A +G+ALER VIR LYGRPLETLL TW Sbjct: 281 YSAYLVQSLFQQFAPHWLALYPLIALPVAFFITAGIGMALERTVIRHLYGRPLETLLATW 340 Query: 346 GISLMLMQAVRSIFGAQNVEVANPSWMSGGITVLGSLVLSYNRIVIIFFALFVVFAVWLI 405 GISLML+Q +R +FG QN+EVANP+W+SGG+ VL +LVL +NRI +I F + V+ WL+ Sbjct: 341 GISLMLIQGIRMLFGPQNLEVANPAWLSGGVQVLPNLVLPWNRIAVIAFVIIVLLLTWLL 400 Query: 406 LNKTRLGLFVRAVTQNRRMADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLG 465 LNKTRLGL VRAVTQNR MA C GV+TG++DM+ FGLG GIAGLGGVALSQLGNVGP+LG Sbjct: 401 LNKTRLGLQVRAVTQNRAMAACCGVATGRVDMLAFGLGSGIAGLGGVALSQLGNVGPELG 460 Query: 466 QGYIVDSFMVVVLGGVGQLAGTVIAAFGLGEVNKFLEPVAGAVLAKIAILVFIIVFIQKR 525 QGYI+DSF+VVVLGGVGQLAG+V+AA GLG +NK LEP GAVL KI ILV II+FIQKR Sbjct: 461 QGYIIDSFLVVVLGGVGQLAGSVVAALGLGMLNKILEPQIGAVLGKILILVLIILFIQKR 520 Query: 526 PQGLFALKGR 535 PQGLFALKGR Sbjct: 521 PQGLFALKGR 530 >SMb20604 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Sme Sinorhizobium meliloti Length = 537 Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust. Identities = 261/500 (52%), Positives = 331/500 (66%), Gaps = 20/500 (4%) Query: 50 QIAALANADAQK---ILNAINSDALYATPA-GDVLIIEDSDA----FNPAT-DKTGPAPD 100 IAALA + IL A+ LYA A G VL+ ++S + +P + D G AP Sbjct: 46 HIAALAKTGKPEVVAILEALGEGELYARKADGQVLLTKESGSNLTLTDPISGDSAGEAPK 105 Query: 101 DA-EGITVNNRLRGVVEGALSGLKLFSPDRATRLTAATELLKTADAAQTPLISKALAAEK 159 A I VNN +R V AL L L SPDR RL AA +L++ DA +I ALAAEK Sbjct: 106 AALSKIRVNNSVRRAVRTALGSLTLLSPDRNQRLRAAQSVLQSPDADALGVIENALAAEK 165 Query: 160 DPQIQEVLKQVVATANLHAPD-AATRKAAVKALAETTNASLKPVLEQMLAKNPDGSYVEA 218 D ++ VL+Q AT L + +K AV+ L E P+L L A Sbjct: 166 DGAVRAVLEQARATMLLLSDRPVEEKKEAVRLLEENGGREALPILSAALGS--------A 217 Query: 219 DEGVRIEAVRTVSALDRHLTITEFVGKLFYGVSLGSVLLLAALGLAITFGLMGIINMAHG 278 DE ++ + ++++++ ++YG+SLGSVLLLAA+GLAITFG+MGIINMAHG Sbjct: 218 DESLKPDIEAALASIEQAQAFWNAGQNIWYGLSLGSVLLLAAIGLAITFGVMGIINMAHG 277 Query: 279 ELLMIGAYTTYVCQLVFRKFFPGAIDAYIVVALPAAFIVAAAVGIALERLVIRWLYGRPL 338 E++M+GAYTT++ Q V R FP + + +ALP AF+V AVG+ALER VIR+LYGRPL Sbjct: 278 EMVMLGAYTTFLVQDVVRTSFPHLFEWSLAIALPLAFLVTGAVGLALERGVIRFLYGRPL 337 Query: 339 ETLLCTWGISLMLMQAVRSIFGAQNVEVANPSWMSGGITVLGSLVLSYNRIVIIFFALFV 398 ETLL TWGISL+L Q VR+IFG N EV NPSWMSG LG L +++NR+ II FAL V Sbjct: 338 ETLLATWGISLILQQTVRTIFGPTNREVGNPSWMSGAFE-LGGLAITWNRLWIIVFALAV 396 Query: 399 VFAVWLILNKTRLGLFVRAVTQNRRMADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLG 458 A+ +L KT +GL +RAVTQNRRMA +G+ T +D +TF LG GIAG+ GVALSQ+ Sbjct: 397 FAALLFLLKKTPMGLQMRAVTQNRRMASSMGIRTPWVDALTFALGSGIAGIAGVALSQID 456 Query: 459 NVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAAFGLGEVNKFLEPVAGAVLAKIAILVFI 518 NV P+LGQGYI+DSFMVVV GGVG L GT++ AF LG +NKFLEP AGAVL KI +LV I Sbjct: 457 NVSPNLGQGYIIDSFMVVVFGGVGNLWGTLVGAFSLGILNKFLEPYAGAVLGKILVLVLI 516 Query: 519 IVFIQKRPQGLFALKGRSVE 538 I+FIQKRP+GLFALKGR+VE Sbjct: 517 ILFIQKRPRGLFALKGRAVE 536 >AGc4379 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 616 Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust. Identities = 252/535 (47%), Positives = 338/535 (63%), Gaps = 23/535 (4%) Query: 16 WLCTQAISAHAAI--DP-ALLKPLAGDDPDARIAAVTQIAALANADAQKILNAINSDALY 72 W T I+AHA DP AL+ L D + QIAA +A L A + LY Sbjct: 92 WF-TMGIAAHAVAQSDPKALIDQLGTADFKQAEVLIGQIAATGDARVVPALEAFAAGDLY 150 Query: 73 ATPAGDVLII-----EDSDAFNPAT-DKTGPAPDDA-EGITVNNRLRGVVEGALSGLKLF 125 + +++ + D +P T + G AP A I VNN LR V+ A+ GL L Sbjct: 151 VRKSDNLVFMTKPAGSDFTLIDPLTGESAGSAPKAAVTKIRVNNNLRRVIRAAMGGLTLL 210 Query: 126 SPDRATRLTAATELLKTADAAQTPLISKALAAEKDPQIQEVLKQVVATANLHAPDAATRK 185 SP+RA RL+AA +LK A L+ A++ E D +++ +++ A + L ++ R Sbjct: 211 SPERAVRLSAADAVLKAPSAENLELLEAAISKETDNEVRTRMEEARAVSLL----SSDRP 266 Query: 186 AAVKALAETTNASL--KPVLEQMLAKNPDGSYVEADEGVRIEAVRTVSALDRHLTITEFV 243 VK A T L + + ++A P D ++ + +S+++ L ++ Sbjct: 267 LEVKKEAIATIKKLGGRDAISILMAATPS-----VDPSLKPDVDEAISSIESALAFWDYA 321 Query: 244 GKLFYGVSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAI 303 ++YG+SLGSVLLLAA+GLAITFG+MGIINMAHGE++MIGAY+T++ Q V R FPG Sbjct: 322 QNVWYGLSLGSVLLLAAIGLAITFGVMGIINMAHGEMVMIGAYSTFMVQEVIRSHFPGLF 381 Query: 304 DAYIVVALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQAVRSIFGAQN 363 D + +ALP AF+V VG+ +ER VIR+LYGRPLETLL TWGISLML Q VRSIFG N Sbjct: 382 DWSLAIALPVAFLVTGFVGLVMERGVIRFLYGRPLETLLATWGISLMLQQGVRSIFGPTN 441 Query: 364 VEVANPSWMSGGITVLGSLVLSYNRIVIIFFALFVVFAVWLILNKTRLGLFVRAVTQNRR 423 EV +P WMSG +V G L ++NR+ I+ F+L V FA+ ++L ++ GL +RAVTQNRR Sbjct: 442 REVGSPGWMSGSFSV-GYLNFTWNRVWIVCFSLSVFFALLVLLKRSAFGLQMRAVTQNRR 500 Query: 424 MADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQ 483 MA +G+ T +D TF LG G+AGL GVALSQ+ NV P+LGQ YI+DSFMVVV GGVG Sbjct: 501 MASSMGIRTPWVDAFTFALGSGVAGLAGVALSQIDNVSPNLGQSYIIDSFMVVVFGGVGN 560 Query: 484 LAGTVIAAFGLGEVNKFLEPVAGAVLAKIAILVFIIVFIQKRPQGLFALKGRSVE 538 L GT++ A LG +NKFLEP GAVL KI +LV II+FIQKRP+GLFALKGR++E Sbjct: 561 LWGTLVGALSLGVLNKFLEPTVGAVLGKILVLVLIILFIQKRPRGLFALKGRAIE 615 >PA4859 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Pae Pseudomonas aeruginosa Length = 317 Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust. Identities = 219/317 (69%), Positives = 267/317 (84%) Query: 222 VRIEAVRTVSALDRHLTITEFVGKLFYGVSLGSVLLLAALGLAITFGLMGIINMAHGELL 281 +RI A +++ + R L + + +G+ F G+SLGS+LLLAALGLAIT+GL+G+INMAHGE+L Sbjct: 1 MRIAAATSLAQVKRRLLVGDLLGQAFSGLSLGSILLLAALGLAITYGLLGVINMAHGEML 60 Query: 282 MIGAYTTYVCQLVFRKFFPGAIDAYIVVALPAAFIVAAAVGIALERLVIRWLYGRPLETL 341 M+GAY+TYV QL+F++ P + Y ++ALP AF V+AA+G+ALER VIR LYGRPLETL Sbjct: 61 MLGAYSTYVVQLLFQRLAPEWLALYPLLALPVAFCVSAAIGMALERTVIRHLYGRPLETL 120 Query: 342 LCTWGISLMLMQAVRSIFGAQNVEVANPSWMSGGITVLGSLVLSYNRIVIIFFALFVVFA 401 L TWGISL+L+Q VR +FGAQNVEVANP+W+SGGI VL +LVL +NRIVII FALFV+ Sbjct: 121 LATWGISLVLIQLVRMLFGAQNVEVANPAWLSGGIQVLPNLVLPWNRIVIIGFALFVLLL 180 Query: 402 VWLILNKTRLGLFVRAVTQNRRMADCVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVG 461 WL+LN+TRLGL VRAVTQNR MA C GV TG++DM+ FGLG GIAGLGGVALSQ+GNVG Sbjct: 181 TWLLLNRTRLGLNVRAVTQNRNMAACCGVPTGRVDMLAFGLGSGIAGLGGVALSQVGNVG 240 Query: 462 PDLGQGYIVDSFMVVVLGGVGQLAGTVIAAFGLGEVNKFLEPVAGAVLAKIAILVFIIVF 521 PDLGQGYI+DSF+VVVLGGVGQLAG+V+AAFGLG NK LEP GAVL KI IL I++F Sbjct: 241 PDLGQGYIIDSFLVVVLGGVGQLAGSVLAAFGLGVANKILEPQIGAVLGKILILALIVLF 300 Query: 522 IQKRPQGLFALKGRSVE 538 IQKRPQGLFALKGR ++ Sbjct: 301 IQKRPQGLFALKGRVID 317