BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0012.p         (135 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2038 [R] COG4674 Uncharacterized ABC-type transport system, A...    73   2e-13
PA4861 [R] COG4674 Uncharacterized ABC-type transport system, AT...    70   1e-12
YPO1190 [R] COG4674 Uncharacterized ABC-type transport system, A...    65   4e-11
all1948 [R] COG4674 Uncharacterized ABC-type transport system, A...    61   5e-10
mll0758 Non COG                                                        60   1e-09

>RSc2038 [R] COG4674 Uncharacterized ABC-type transport system, ATPase
          component Rso Ralstonia solanacearum
          Length = 287

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 6/70 (8%)

Query: 29 IKPEGVDTTHGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGARQDHHDGRHH 88
          ++P+ +D +HG ILYLE++TV F GF+A+N L L I  GELRC+IGPNGA      G+  
Sbjct: 27 LEPDAIDVSHGPILYLEDVTVRFGGFRALNALTLSIDHGELRCVIGPNGA------GKTT 80

Query: 89 RQDATHGGHG 98
            D   G  G
Sbjct: 81 MMDVITGKTG 90


>PA4861 [R] COG4674 Uncharacterized ABC-type transport system, ATPase
          component Pae Pseudomonas aeruginosa
          Length = 285

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 36/45 (80%)

Query: 34 VDTTHGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGA 78
          +D  HG IL LE+I VSFDGFKA+ +L L I VGELRCIIGPNGA
Sbjct: 37 LDARHGTILSLEDINVSFDGFKALRDLTLYIGVGELRCIIGPNGA 81


>YPO1190 [R] COG4674 Uncharacterized ABC-type transport system, ATPase
          component Ype Yersinia pestis
          Length = 278

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 32/38 (84%)

Query: 41 ILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGA 78
          +L LENI VSFDGF A+ NL+L I VGELRCIIGPNGA
Sbjct: 37 VLTLENINVSFDGFHALRNLSLQIGVGELRCIIGPNGA 74


>all1948 [R] COG4674 Uncharacterized ABC-type transport system, ATPase
          component Nos Nostoc sp. PCC 7120
          Length = 246

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 32/41 (78%)

Query: 38 HGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGA 78
          +  IL  EN+TVSFDGFKA+N LN  + VGELR +IGPNGA
Sbjct: 2  NAKILETENVTVSFDGFKALNQLNFSMDVGELRVVIGPNGA 42


>mll0758 Non COG
          Length = 248

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 33/39 (84%)

Query: 40 AILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGA 78
           ILYL+ ++VSFDGF+AINNL+L +  GE+R IIGPNGA
Sbjct: 6  TILYLDGVSVSFDGFRAINNLSLVLDKGEMRAIIGPNGA 44