BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0003.p (226 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2030 [O] COG0830 Urease accessory protein UreF Rso Ralstonia ... 162 6e-40 PA4892 [O] COG0830 Urease accessory protein UreF Pae Pseudomonas... 131 1e-30 alr0734 [O] COG0830 Urease accessory protein UreF Nos Nostoc sp.... 130 2e-30 ZureF.2 [O] COG0830 Urease accessory protein UreF EcZ Escherichi... 118 1e-26 ZureF [O] COG0830 Urease accessory protein UreF EcZ Escherichia ... 118 1e-26 >RSc2030 [O] COG0830 Urease accessory protein UreF Rso Ralstonia solanacearum Length = 229 Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 109/226 (48%), Positives = 135/226 (59%), Gaps = 8/226 (3%) Query: 6 LLHLLQLTSPSLPIGAYSYSQGLEAAIENGTVKNEAGARAWIVDSLHEVVARFEAPILWR 65 L LL L SP+LP+GA+SYSQGLEAA+E V +EA A WI + L V+A EAP LW Sbjct: 7 LTALLHLASPALPVGAFSYSQGLEAAVEARHVHDEASAARWIAEGL-AVLAACEAP-LW- 63 Query: 66 LLQAFD--ARDTDAVALWNERFIAARDTAEFRAETIQMGYSLSKLAVDLKIGDQPLLDLL 123 LLQ D A DAVA + F+A R+T E R ET QMG+SL++L + G + D L Sbjct: 64 LLQYADWQAGRLDAVAERDGWFLATRETRELRLETAQMGWSLARLIAQMGWGAPAMRDAL 123 Query: 124 QAQGEVPLPTALAYAAVALNVPHDAALLGMLFAWAENQVLVCVKSVPLGQVAGQRLLLSL 183 A+ + PTA A AAVAL + L FAW ENQV VK++PLGQ AGQR+L L Sbjct: 124 AARAAITFPTAFAAAAVALGIEARDGLTAYSFAWVENQVAAAVKAIPLGQAAGQRILFGL 183 Query: 184 QP---ELEAAAKTAQELADDELSNWSPGLSLLSMQHEVQYSRLYRS 226 + A ELS +SPGL +LS +HE QYSRL+RS Sbjct: 184 HAAVGQAAEDAARRAACHPPELSTFSPGLGVLSARHETQYSRLFRS 229 >PA4892 [O] COG0830 Urease accessory protein UreF Pae Pseudomonas aeruginosa Length = 223 Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 100/217 (46%), Positives = 129/217 (59%), Gaps = 1/217 (0%) Query: 10 LQLTSPSLPIGAYSYSQGLEAAIENGTVKNEAGARAWIVDSLHEVVARFEAPILWRLLQA 69 L+L S LPIG YSYSQGLEAA++NG V++ AR W+VD L +ARFEAP+L LL+A Sbjct: 8 LRLASSQLPIGGYSYSQGLEAALDNGWVRDAESARTWLVDQLQLNLARFEAPLLAGLLRA 67 Query: 70 FDARDTDAVALWNERFIAARDTAEFRAETIQMGYSLSKLAVDLKIGDQPLLDLLQAQGEV 129 D A +ER A+R+T E E+ QMG+SL +L L D P L Q Sbjct: 68 ALIGDWAACDAASERHRASRETRELAQESRQMGFSLHQLLEALPELDAPGRAWLARQDPP 127 Query: 130 PLPTALAYAAVALNVPHDAALLGMLFAWAENQVLVCVKSVPLGQVAGQRLLLSLQPELEA 189 L A A AA A + + AL ++W ENQ+ V +K++PLGQ+A Q+L SL PEL+ Sbjct: 128 NLAAAWAMAARAWRLDAEEALSAWFWSWLENQLAVLMKTLPLGQLAAQKLASSLLPELDR 187 Query: 190 AAKTAQELADDELSNWSPGLSLLSMQHEVQYSRLYRS 226 A A E S + GL+L SM HE QYSRL+RS Sbjct: 188 ACAEALRRPAVEGSA-AFGLALASMTHETQYSRLFRS 223 >alr0734 [O] COG0830 Urease accessory protein UreF Nos Nostoc sp. PCC 7120 Length = 206 Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/211 (43%), Positives = 120/211 (56%), Gaps = 8/211 (3%) Query: 19 IGAYSYSQGLEAAIENGTVKNEAGARAWIVDSLHEVVARFEAPILWRLLQAFDARDTDAV 78 +GAYSYS+GLE +ENGT+ +++ + W+ L R EA ++ R QA D + + Sbjct: 1 MGAYSYSEGLETLVENGTITSQSTLQQWLEAELSYGAIRLEAAVMVRAYQAATMDDMETL 60 Query: 79 ALWNERFIAARDTAEFRAETIQMGYSLSKLAVDLKIGDQP-LLDLLQAQGEVPLPTALAY 137 WN AAR+T E R + QMG SL +L + QP +L L A G P A+A+ Sbjct: 61 CYWNLWLSAARETQELRNSSWQMGRSLMQLLGKI----QPEILPLANAVGN-PCNYAIAF 115 Query: 138 --AAVALNVPHDAALLGMLFAWAENQVLVCVKSVPLGQVAGQRLLLSLQPELEAAAKTAQ 195 A+ + AALL L +WA N + VK +PLGQ AGQ LLL LQP + A Sbjct: 116 GIASAHWQINIQAALLAYLHSWATNLITAGVKLIPLGQTAGQELLLQLQPLISHATVEIM 175 Query: 196 ELADDELSNWSPGLSLLSMQHEVQYSRLYRS 226 L DDELS S GLSL SMQHE QY+RL+RS Sbjct: 176 SLKDDELSCCSWGLSLASMQHETQYTRLFRS 206 >ZureF.2 [O] COG0830 Urease accessory protein UreF EcZ Escherichia coli O157:H7 EDL933 Length = 224 Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 3/220 (1%) Query: 7 LHLLQLTSPSLPIGAYSYSQGLEAAIENGTVKNEAGARAWIVDSLHEVVARFEAPILWRL 66 L L+QL S SLP+G YS+SQGLE A+E G V++ A W + + + P+L RL Sbjct: 8 LRLMQLASNSLPVGGYSWSQGLEWAVEAGWVEDSAAFEHWQQLQMEQSFFAVDLPLLARL 67 Query: 67 LQAFDARDTDAVALWNERFIAARDTAEFRAETIQMGYSLSKLAVDLKIGDQPLLDLLQAQ 126 +A +A D D+ W +A R+T E R E G + ++L VD + L Q Sbjct: 68 YRACEAGDPDSAGRWTAYLLACRETRELRDEERNRGAAFTRLLVDWQPDCPAEWRKLCQQ 127 Query: 127 GEVPLPTALAYAAVALNVPHDAALLGMLFAWAENQVLVCVKSVPLGQVAGQRLLLSLQPE 186 ++ T +A+ V + L + ++W E+ V+ V+ VP GQ+A Q+L++ L Sbjct: 128 SQL---TGMAWLGVRWQISVSDLALSLGYSWIESAVMAGVRLVPYGQLAAQQLIMRLCAR 184 Query: 187 LEAAAKTAQELADDELSNWSPGLSLLSMQHEVQYSRLYRS 226 A +A D + + +P S+ S +HE QYSRL+RS Sbjct: 185 YAANMDSALATPDHAIGSATPLASIASARHETQYSRLFRS 224 >ZureF [O] COG0830 Urease accessory protein UreF EcZ Escherichia coli O157:H7 EDL933 Length = 224 Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 3/220 (1%) Query: 7 LHLLQLTSPSLPIGAYSYSQGLEAAIENGTVKNEAGARAWIVDSLHEVVARFEAPILWRL 66 L L+QL S SLP+G YS+SQGLE A+E G V++ A W + + + P+L RL Sbjct: 8 LRLMQLASNSLPVGGYSWSQGLEWAVEAGWVEDSAAFEHWQQLQMEQSFFAVDLPLLARL 67 Query: 67 LQAFDARDTDAVALWNERFIAARDTAEFRAETIQMGYSLSKLAVDLKIGDQPLLDLLQAQ 126 +A +A D D+ W +A R+T E R E G + ++L VD + L Q Sbjct: 68 YRACEAGDPDSAGRWTAYLLACRETRELRDEERNRGAAFTRLLVDWQPDCPAEWRKLCQQ 127 Query: 127 GEVPLPTALAYAAVALNVPHDAALLGMLFAWAENQVLVCVKSVPLGQVAGQRLLLSLQPE 186 ++ T +A+ V + L + ++W E+ V+ V+ VP GQ+A Q+L++ L Sbjct: 128 SQL---TGMAWLGVRWQISVSDLALSLGYSWIESAVMAGVRLVPYGQLAAQQLIMRLCAR 184 Query: 187 LEAAAKTAQELADDELSNWSPGLSLLSMQHEVQYSRLYRS 226 A +A D + + +P S+ S +HE QYSRL+RS Sbjct: 185 YAANMDSALATPDHAIGSATPLASIASARHETQYSRLFRS 224