BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0004.p         (224 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0367_1 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) ac...    95   1e-19
Z4856 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid l...    77   3e-14
ECs4331 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid...    77   3e-14
XF1038 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ...    65   1e-10

>RSp0367_1 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
           Rso Ralstonia solanacearum
          Length = 438

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 93/183 (50%), Gaps = 8/183 (4%)

Query: 10  VYRPHFVCTHGCAIRLSQRPGARFALYLQDTISFAAALFGAWQAGKTIYLPSDTLAETCK 69
           ++R H      C    S R   R+AL + D  +FA ALF    +GK + +P+ +      
Sbjct: 30  MFRAHVAA---CIAAWSDRCANRYALCIDDPFAFACALFALLASGKAVVIPASSAPAYLA 86

Query: 70  ALALEVDGFIGEFDAALQPLQPSSAPAVADKAGTPQPLDGDAPALVVYTSGSTGTAQAIP 129
           ++A   D  + + D      Q +  P     A   +P+   AP + +YTSGS+   +AI 
Sbjct: 87  SIADAYDSALTDGDMEGIISQAAQPPG----AALLRPIAPHAP-ITLYTSGSSAAPKAIH 141

Query: 130 KKLSQLSTEVATLEALFGAQAGAADIVSTVSHQHIYGLLFKVLWPLAAGRAIHARSAFFP 189
           K L+Q   EV TLE  +G   G   I+++V H HIYGLLF++ WPLA+GRA   R+   P
Sbjct: 142 KTLAQFDAEVRTLEDHWGEWIGPGAILASVPHHHIYGLLFRIFWPLASGRAFGRRTYAEP 201

Query: 190 EDL 192
             L
Sbjct: 202 HAL 204


>Z4856 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
           EcZ Escherichia coli O157:H7 EDL933
          Length = 453

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 3/181 (1%)

Query: 24  RLSQRPGARFALYLQDTISFAAALFGAWQAGKTIYLPSDTLAETCKALALEVDGFIGEFD 83
           RL Q+PG R+AL  +++  F  AL     AGKT  LP               DG + + +
Sbjct: 44  RLQQQPGERWALCFENSYLFIVALLATLHAGKTPVLPGHNRVIQLNEQRELFDGVLSDSE 103

Query: 84  AALQP--LQPSSAPAVADKAGTPQPLDGDAPALVVYTSGSTGTAQAIPKKLSQLSTEVAT 141
              Q   L  +S+P +A ++ T   +  +A  + ++TSGSTG  +   K +  L  E   
Sbjct: 104 LNWQGSLLLVASSPQIATQSFTFAAIAPEA-FIELFTSGSTGQPKRAIKPVHLLDREAEL 162

Query: 142 LEALFGAQAGAADIVSTVSHQHIYGLLFKVLWPLAAGRAIHARSAFFPEDLAAMGAXSAF 201
           L    GA+     +V +V  QH+YGL F+V  P+A G  +HA   ++ E  AA+     +
Sbjct: 163 LAERLGARLAGCRVVGSVLPQHLYGLTFRVFLPMALGLPLHAAMLWYVEQFAALSHQHRY 222

Query: 202 F 202
            
Sbjct: 223 I 223


>ECs4331 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
           Ecs Escherichia coli O157:H7
          Length = 453

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 3/181 (1%)

Query: 24  RLSQRPGARFALYLQDTISFAAALFGAWQAGKTIYLPSDTLAETCKALALEVDGFIGEFD 83
           RL Q+PG R+AL  +++  F  AL     AGKT  LP               DG + + +
Sbjct: 44  RLQQQPGERWALCFENSYLFIVALLATLHAGKTPVLPGHNRVIQLNEQRELFDGVLSDSE 103

Query: 84  AALQP--LQPSSAPAVADKAGTPQPLDGDAPALVVYTSGSTGTAQAIPKKLSQLSTEVAT 141
              Q   L  +S+P +A ++ T   +  +A  + ++TSGSTG  +   K +  L  E   
Sbjct: 104 LNWQGSLLLVASSPQIATQSFTFAAIAPEA-FIELFTSGSTGQPKRAIKPVHLLDREAEL 162

Query: 142 LEALFGAQAGAADIVSTVSHQHIYGLLFKVLWPLAAGRAIHARSAFFPEDLAAMGAXSAF 201
           L    GA+     +V +V  QH+YGL F+V  P+A G  +HA   ++ E  AA+     +
Sbjct: 163 LAERLGARLAGCRVVGSVLPQHLYGLTFRVFLPMALGLPLHAAMLWYVEQFAALSHQHRY 222

Query: 202 F 202
            
Sbjct: 223 I 223


>XF1038 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
           Xfa Xylella fastidiosa 9a5c
          Length = 503

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 28/207 (13%)

Query: 9   SVYRPHFVCTHGCAIRL-----------SQRPGARFALYL-QDTISFAAALFGAWQAGKT 56
           S++RP  V  HG  I L           +Q P  R+ + L +D   F  A +     G+ 
Sbjct: 73  SLHRP-LVWVHGKPITLGRFLAQVRGLAAQLPSGRYVVNLCEDRYRFLLAFYACALRGQV 131

Query: 57  IYLPSD----TLAETCKALALEVDGF-IGEFDAALQPLQPSSAPAV-ADKAGTPQPLDGD 110
             LPS      +AE   A     D + +G+ + +L+ L+    P +  +  G    L  D
Sbjct: 132 SLLPSSRAPGVVAEIYAAYP---DSYCLGDRELSLESLRYWHLPEIFPELDGAIPSLSED 188

Query: 111 APALVVYTSGSTGTAQAIPKKLSQLST----EVATLEALFGAQAGAADIVSTVSHQHIYG 166
           A   + +TSGSTG   +  K    L T    +     +L+G+Q     +V+TV  QH+YG
Sbjct: 189 AVVAIGFTSGSTGVPTSNLKTWGSLVTSTEQDWVAFHSLWGSQV--PTVVATVPPQHMYG 246

Query: 167 LLFKVLWPLAAGRAIHARSAFFPEDLA 193
           + F VL PL A  A++A   FFPED+A
Sbjct: 247 MEFSVLLPLLAPVAVYAGRPFFPEDVA 273