BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0120.p (485 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0008 [T] COG4191 Signal transduction histidine kinase regulat... 200 7e-51 PA1336 [T] COG4191 Signal transduction histidine kinase regulati... 194 3e-49 AGl3043 [T] COG4191 Signal transduction histidine kinase regulat... 181 4e-45 SMb20612 [T] COG4191 Signal transduction histidine kinase regula... 169 2e-41 RSc0331 [T] COG4191 Signal transduction histidine kinase regulat... 162 1e-39 >RSp0008 [T] COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system Rso Ralstonia solanacearum Length = 634 Score = 200 bits (508), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 123/257 (47%), Positives = 161/257 (62%), Gaps = 5/257 (1%) Query: 10 AIYQRRRRLQERLESRDALRRAAQELDATIAVRTQELRVANQALEGKYVTLQQTESLLRS 69 A+ R RR +E+ +R ALR ++L+A IA RT EL AN AL K L + +LR Sbjct: 333 ALRLRARRHEEQRRARAALREVQRDLEARIAQRTAELTSANAALASKVEALDTAQRILRE 392 Query: 70 TQNELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVQFMRRGQLPQVEENLEHISG 129 T++ VQAGKLA+LGQMAAG+THELNQPL A+ +DNA Q RG++ +V NL HIS Sbjct: 393 TRDAAVQAGKLAVLGQMAAGITHELNQPLTALTTLSDNANQLAERGRVDEVRGNLAHISQ 452 Query: 130 ASAHMGKIIAQLKGFARKSGDAIAVVDVAQTVEAAVLLLRNEFRQ-QAVSIEIDVRSPVQ 188 + MG+I++ +KGFARK A A V V + + A++L+ RQ + V V Sbjct: 453 LAHRMGRIVSHIKGFARKGDAARAAVPVEEAIRQALMLVETRRRQAGVPVVVGPVPPGVA 512 Query: 189 VMGDVVRTEQVLINLLRNAIDAVETVEYVADKRVTVIVEHEAGEAVIRI--RDSGPGIPD 246 V + VR EQVL+NL+RNAIDA T E + V V +A +A++RI RD+GPGI Sbjct: 513 VWANAVRLEQVLVNLIRNAIDA--TAEAPRPEAAGVRVTAQADDALVRITVRDAGPGIAP 570 Query: 247 EVAPHLFEPFFTTKPSG 263 EV PHLFEPFFTTK G Sbjct: 571 EVLPHLFEPFFTTKADG 587 >PA1336 [T] COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system Pae Pseudomonas aeruginosa Length = 633 Score = 194 bits (494), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 116/264 (43%), Positives = 161/264 (60%), Gaps = 11/264 (4%) Query: 1 MAIAAISLWAIYQRRRRLQERLESRDALRRAAQELDATIAVRTQELRVANQALEGKYVTL 60 A+ A L A +RR+ L RL +R+AL+RA EL+ IA RT +L+ +N L + Sbjct: 326 FALLAFLLIAWNERRKVLATRLAAREALQRANGELEVKIAERTADLQASNARLTAEIHER 385 Query: 61 QQTESLLRSTQNELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVQFMRRGQLPQV 120 QQ E LR Q+ELVQAGKLA++GQM+ + HELNQPLAA+R + N V+F++RG+L Sbjct: 386 QQAEDTLRKAQDELVQAGKLAVIGQMSTSIAHELNQPLAALRTLSGNTVRFLQRGKLETA 445 Query: 121 EENLEHISGASAHMGKIIAQLKGFARKSGDAIAVVDVAQTVEAAVLLLRNEFRQQAVSIE 180 NL I+ MG+I A L+ FAR+S DA +A+ V+AA+L+L Q ++ Sbjct: 446 STNLATINELVDRMGRITASLRAFARRSDDA-GQASLAKAVDAALLILHGRLEQDPPTLH 504 Query: 181 ---IDVRSPVQVMGDVVRTEQVLINLLRNAIDAVETVEYVADKRVTVIVEHEAGEAVIRI 237 DVR + D R EQ+L+NLL NA+DA+ AD+++ + E V+R+ Sbjct: 505 RHFDDVRLGI----DQTRLEQILVNLLANALDAMSG---QADRQLWLEGRREEERYVLRV 557 Query: 238 RDSGPGIPDEVAPHLFEPFFTTKP 261 RD+GPGIP HLFEPFFTTKP Sbjct: 558 RDNGPGIPPAARVHLFEPFFTTKP 581 >AGl3043 [T] COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 633 Score = 181 bits (458), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 107/264 (40%), Positives = 161/264 (60%), Gaps = 8/264 (3%) Query: 1 MAIAAISLWAIYQRRRRLQERLESRDALRRAAQELDATIAVRTQELRVANQALEGKYVTL 60 M + A+S + +++R + L+E+ E + RA EL+ + RT++L L+ + Sbjct: 340 MPLMALSAFWLWRRHKALREKEEEQ----RARAELEMKVQERTRDLTKTRDHLQAEITLH 395 Query: 61 QQTESLLRSTQNELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVQFMRRGQLPQV 120 ++T LR+ Q+ELVQA +L++LGQ+AAGV HE+NQP+A IRAFADNA ++R +L + Sbjct: 396 EKTTGELRNVQHELVQANRLSILGQVAAGVAHEINQPVATIRAFADNARTLLKRDRLAEA 455 Query: 121 EENLEHISGASAHMGKIIAQLKGFARKSGDAIAVVDVAQTVEAAVLLLRNEFRQQAVSIE 180 ENLE I+ + +G I LK ARK A V +E AV+LLR+ F Q +++ Sbjct: 456 NENLEDIAALTERIGTITTDLKILARKGRTAAEPVSARLVIEGAVVLLRSRFSGQMDALD 515 Query: 181 IDVRS-PVQVMGDVVRTEQVLINLLRNAIDAVETVEYVADKRVTVIVEHEAGEAVIRIRD 239 I + ++V+G +R EQ+LINLL+NA++A ET+E RV V V E VI + D Sbjct: 516 IVLPDQDLKVLGSRIRLEQILINLLQNALEATETIETA---RVEVRVREEGDMVVISVSD 572 Query: 240 SGPGIPDEVAPHLFEPFFTTKPSG 263 +G GIP+ + LF PF T+K SG Sbjct: 573 NGAGIPEAIRAQLFSPFNTSKESG 596 >SMb20612 [T] COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system Sme Sinorhizobium meliloti Length = 621 Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 99/236 (41%), Positives = 146/236 (61%), Gaps = 4/236 (1%) Query: 29 RRAAQELDATIAVRTQELRVANQALEGKYVTLQQTESLLRSTQNELVQAGKLAMLGQMAA 88 R A L+A++ RT++LR+A LE + +QT L++ Q +LVQA +LA+LGQ+AA Sbjct: 352 RLARNALEASVEERTRDLRMARDRLETEIADHRQTTEKLQAVQQDLVQANRLAILGQVAA 411 Query: 89 GVTHELNQPLAAIRAFADNAVQFMRRGQLPQVEENLEHISGASAHMGKIIAQLKGFARKS 148 GV HE+NQP+A IRA+ADNA F+ RGQ EN+E I+ + +G I +L+ FARK Sbjct: 412 GVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMESIAELTERVGAITDELRRFARKG 471 Query: 149 GDAIAVVDVAQTVEAAVLLLRNEFRQQAVSIEIDVRSP-VQVMGDVVRTEQVLINLLRNA 207 A + + VE A++LLR+ F + +I +D+ +Q +G+ +R EQVLINLL+NA Sbjct: 472 HFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRLDLPPDGLQALGNRIRLEQVLINLLQNA 531 Query: 208 IDAVETVEYVADKRVTVIVEHEAGEAVIRIRDSGPGIPDEVAPHLFEPFFTTKPSG 263 ++A+ E D + V E AG + + D+GPGI +V LF PF T+K G Sbjct: 532 LEAIGDSE---DGAIQVRCEEAAGGIALTVADNGPGIAADVREELFTPFNTSKEDG 584 >RSc0331 [T] COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system Rso Ralstonia solanacearum Length = 665 Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 103/239 (43%), Positives = 140/239 (58%), Gaps = 8/239 (3%) Query: 31 AAQELDATIAVRTQELRVANQALEGKYVTLQQTESLLRSTQNELVQAGKLAMLGQMAAGV 90 A +L+ + RT +L N+ L+ + V + E+ LR+TQ+ELVQA KLA LGQMAAG+ Sbjct: 381 AYDQLERRVEDRTADLMATNEQLQHEIVDRTRAEAELRATQDELVQASKLAALGQMAAGI 440 Query: 91 THELNQPLAAIRAFADNAVQFMRRGQLPQVEENLEHISGASAHMGKIIAQLKGFARKSGD 150 THELNQPLAA+R F+DN + RGQ +NL I+ + MGKI AQLK FA +S Sbjct: 441 THELNQPLAALRTFSDNTRILLERGQHGAAADNLRAIADLTERMGKITAQLKLFAGRSRR 500 Query: 151 AIAVVDVAQTVEAAVLLLRNEFRQQAVSIEIDVRSP---VQVMGDVVRTEQVLINLLRNA 207 +A V V ++ + LLR R V + R P V D ++ EQVLINL+ NA Sbjct: 501 RLADVQVRVALDHVLALLRP--RLAEVETALHWRLPEAACVVRADELKLEQVLINLIGNA 558 Query: 208 IDAVETVEYVADKRVTVIVEHEAG---EAVIRIRDSGPGIPDEVAPHLFEPFFTTKPSG 263 +DA+ + R+ + + G + I +RD+GPGI + PHLFEPFFTTK G Sbjct: 559 LDAIAANDLPRPGRIDIDIGPADGAPAQLCIVVRDNGPGIAADAMPHLFEPFFTTKEIG 617