BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0116.p (537 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 423 e-118 RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 361 3e-99 RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 355 2e-97 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 352 1e-96 RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 348 1e-95 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust. Identities = 247/515 (47%), Positives = 347/515 (67%), Gaps = 8/515 (1%) Query: 4 IGNMRIGKRLALGFAVILAFSIVITAIGIWRLQTVSSATREMMSQPL----LKERLIGDW 59 I +MRIG RL FA+++A I I A+GI RL ++ +++S+ L ++ + Sbjct: 3 ISDMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKNNG 62 Query: 60 YANLASGIRRTIAIAKSSDPALGPYFAAEAAASSKGSGEYQKKVEALLESDEEKKLFQKI 119 Y A+GI + + + P + ++ AA + + + ++E LL +D+ K LF++ Sbjct: 63 YK--ANGILSNLLLVTT--PEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGKALFKEQ 118 Query: 120 GEQRKLYLSSRDAINKAKAAGNIEEAERVLEKDFVPASNAYQDTMRQLVELQRKDIDETA 179 + R Y +S A N++EA + + D + Y + ++V+ Q +++ Sbjct: 119 FDARSAYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVDHQAGEMEHDV 178 Query: 180 KHIDIIAEDSRILLLALEGLILVLGVLCAWYLTVGITRPINSAVTISRRVAEGDLTSDVQ 239 +++I ++ L L +L + ++T ITRPIN A+ ++ VA+G+LT ++ Sbjct: 179 SEAAAQGANAKIQMIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGNLTHLLE 238 Query: 240 VGSKDETGQLLQALQDMNISLRGIVSNVRTGTDTIATASSEIAAGNLDLSSRTEQQASAL 299 V ++DE G+LL AL+ M +L GIVS VR GTDTI ASSE+A+GN+DLSSRTEQQAS+L Sbjct: 239 VDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSL 298 Query: 300 EETASSMEELISTVKQNADNARQANQLAVSASEIATQGGGVVGQVVDTMGAINDSSRKIV 359 EETA++ME+L STVKQNADNA++A++LA +AS +AT+GG V + + TM IN SSRKIV Sbjct: 299 EETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIV 358 Query: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIN 419 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSAAAAKEIK LI Sbjct: 359 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIE 418 Query: 420 DSVEKVGNGSKLVEQAGATMAEVVNSVRRVTDIVAEISSASEEQTTGIEQINHAITQMDQ 479 DSV V G+ VE+AG + +VV ++ VT+IV+EIS++S EQ+ GIEQIN AITQMD+ Sbjct: 419 DSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDK 478 Query: 480 VTQQNAALVEEAAAAAASMQSQADSLAQLVSVFTL 514 TQ+NA+LVEE+A AA ++Q QA+ LA +VS F L Sbjct: 479 ATQENASLVEESATAAQALQDQANQLADMVSTFKL 513 >RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 608 Score = 361 bits (926), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 256/537 (47%), Positives = 336/537 (62%), Gaps = 44/537 (8%) Query: 6 NMRIGKRLALGFAVILAFSIVITAIGIWRLQTVSS---ATREMM----------SQPLLK 52 M I RLAL A + ++VI G+ ++ ++ AT EM +L Sbjct: 4 GMTIRLRLALMMAGVAVLAVVIGTTGLLGMRHANTRVQATYEMQLAGAVALAESDASMLS 63 Query: 53 ERLIGDWYAN--LASGIRRTIAIAKSSDPALGPYFAAEAAASSKGSGEYQKKVEALLESD 110 RL+ D A A + +T+ A+ F A++ AS K+ AL + Sbjct: 64 FRLVLDRAAMDIKAPSLGKTLERAR--------MFLAKSDAS-------WKRYRALPSTP 108 Query: 111 EEKKLFQKIGEQRKLYLSSRD---AINKAKAAGNIEE-AERVLEKD---FVPASNAYQDT 163 +E+KL + R ++L RD A+ +A AG+ E ++ V+E + P + Sbjct: 109 DERKLADEADALRTVFL--RDGAQALMQAIQAGDAERTSQTVMEAMPALYRPLGDKVTAL 166 Query: 164 MRQLVELQRKDIDETAKHIDIIAEDSRILLLALEGLILVLGVLCAWYLTVGITRPINSAV 223 R +E+ R + + D L AL + +V G L W L IT P+N A+ Sbjct: 167 SRMQMEIARASYEAGQREHD----GLSALTAALLLVGIVGGGLLTWSLRRSITVPLNRAI 222 Query: 224 TISRRVAEGDLTSDVQVGSKDETGQLLQALQDMNISLRGIVSNVRTGTDTIATASSEIAA 283 + + GDLT + V DETG++L ALQ M SL+G+V VRTG+D IA+A+ +IAA Sbjct: 223 EQAEHITRGDLTHAIHVDRADETGRMLLALQRMQESLQGMVGQVRTGSDAIASATQQIAA 282 Query: 284 GNLDLSSRTEQQASALEETASSMEELISTVKQNADNARQANQLAVSASEIATQGGGVVGQ 343 GN DLS RTEQQAS+LEETASSME+L VKQNAD+ARQA+ LAV+AS+IA +GG VVG+ Sbjct: 283 GNADLSQRTEQQASSLEETASSMEQLTGMVKQNADSARQASTLAVNASDIAVKGGEVVGR 342 Query: 344 VVDTMGAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 403 VV+TM I+DSSRKI DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSL Sbjct: 343 VVETMAGIHDSSRKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSL 402 Query: 404 AQRSAAAAKEIKVLINDSVEKVGNGSKLVEQAGATMAEVVNSVRRVTDIVAEISSASEEQ 463 AQRSA AAKEIK LI+DSV +V +G+ LV +AG + EVV +V+RVT I+ EIS+AS+ Q Sbjct: 403 AQRSAGAAKEIKTLISDSVGRVESGTTLVAEAGTVIDEVVVAVKRVTGIMGEISAASDAQ 462 Query: 464 TTGIEQINHAITQMDQVTQQNAALVEEAAAAAASMQSQADSLAQLVSVF-TLSGTPA 519 + GI Q+N A+TQMD+ TQQNAALVE+AAAAA S+Q QAD L V+ F T + PA Sbjct: 463 SEGIAQVNQAVTQMDEATQQNAALVEQAAAAAMSLQEQADGLRGTVAAFRTRADAPA 519 >RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 355 bits (911), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 209/394 (53%), Positives = 268/394 (68%), Gaps = 8/394 (2%) Query: 95 GSGEYQKKVEALLESDEEKKLFQKIGEQRKLYLSSRDAINKAKAAGNIEEAERVLEK--- 151 GS KK AL DEE +L +++G +R+ S I KA A + A+ +++K Sbjct: 93 GSDAAWKKYLALPHGDEETRLSKEVGTKREAAAGSLRDIIKALRASDRAAADAIMDKRVS 152 Query: 152 -DFVPASNAYQDTMRQLVELQRKDIDETAKHIDIIAEDSRILLLALEGLILVLGVLCAWY 210 F A++A Q +Q + + + D++ + I R L++A L LV+ CAW Sbjct: 153 KSFREANDASQALGKQQLTFSKANFDDSQQAYARI----RNLVIAAIVLALVVSAGCAWL 208 Query: 211 LTVGITRPINSAVTISRRVAEGDLTSDVQVGSKDETGQLLQALQDMNISLRGIVSNVRTG 270 L I P+N+ + R+A GDLT V++ +DE G LL+ L M +L V VR G Sbjct: 209 LLRAIVGPLNATLAQFDRIAAGDLTQPVRIDRRDEMGHLLEGLARMQAALTDTVRRVRHG 268 Query: 271 TDTIATASSEIAAGNLDLSSRTEQQASALEETASSMEELISTVKQNADNARQANQLAVSA 330 +++I A+ +IAAGN DLS RTE QAS+LEETASSMEE+ S V+QNADNARQA+QLA SA Sbjct: 269 SESIGAATKQIAAGNADLSQRTEGQASSLEETASSMEEMTSIVRQNADNARQASQLADSA 328 Query: 331 SEIATQGGGVVGQVVDTMGAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQG 390 S +A+QGG VV VV TM I+ SSR + +II VIDGIAFQTNILALNAAVEAARAGEQG Sbjct: 329 SAVASQGGAVVTDVVATMREISASSRTVSEIIGVIDGIAFQTNILALNAAVEAARAGEQG 388 Query: 391 RGFAVVASEVRSLAQRSAAAAKEIKVLINDSVEKVGNGSKLVEQAGATMAEVVNSVRRVT 450 RGFAVVA EVRSLAQRSAAAAKEIK +I S+ KV GSKL EQAG+TM +V S+RRVT Sbjct: 389 RGFAVVAGEVRSLAQRSAAAAKEIKEMIEASLAKVDTGSKLAEQAGSTMENIVTSIRRVT 448 Query: 451 DIVAEISSASEEQTTGIEQINHAITQMDQVTQQN 484 DI+ EI++AS EQ++GIEQ+N A+T MD+ TQQN Sbjct: 449 DIMGEIAAASSEQSSGIEQVNKAVTLMDEATQQN 482 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 352 bits (904), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 190/301 (63%), Positives = 235/301 (78%) Query: 215 ITRPINSAVTISRRVAEGDLTSDVQVGSKDETGQLLQALQDMNISLRGIVSNVRTGTDTI 274 + P+N + + +A GDLT +++V ++E G L +L+ M L IV VR G D I Sbjct: 218 LIHPLNHLIAHIKHIANGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAI 277 Query: 275 ATASSEIAAGNLDLSSRTEQQASALEETASSMEELISTVKQNADNARQANQLAVSASEIA 334 + +SEIA GN DLS+RTEQQA++LEETA+SME+L +TVKQNA+NARQA+QLA+SASE A Sbjct: 278 YSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASETA 337 Query: 335 TQGGGVVGQVVDTMGAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 394 +GG VV VV TM I SS+KI DI SVIDGIAFQTNILALNAAVEAARAGEQGRGFA Sbjct: 338 QKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFA 397 Query: 395 VVASEVRSLAQRSAAAAKEIKVLINDSVEKVGNGSKLVEQAGATMAEVVNSVRRVTDIVA 454 VVA EVR+LAQRSA AAKEIK LI+DSV +V GS LVE AG TM ++VN+V RVTDI+ Sbjct: 398 VVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMG 457 Query: 455 EISSASEEQTTGIEQINHAITQMDQVTQQNAALVEEAAAAAASMQSQADSLAQLVSVFTL 514 EI+SAS+EQ+ GI+QI A+ +MD+VTQQNA+LVEE+A+AAAS++ QA L Q +SVF L Sbjct: 458 EIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVL 517 Query: 515 S 515 S Sbjct: 518 S 518 >RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 600 Score = 348 bits (894), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 244/501 (48%), Positives = 322/501 (64%), Gaps = 23/501 (4%) Query: 26 VITAIGIWRLQTVSSATREMMSQPLLKERLIGDWYANLASGIRRTIAIAKSS-DPALGPY 84 +I IG+ ++ + RE+ S L L+ N A+ IR T+ A D A P Sbjct: 24 IIGTIGVIGMRASDANIREIYSNQLASTSLVSKAQLN-AAVIRTTLDRAVFHIDAADVPA 82 Query: 85 FAAEAAASSKGSGEYQKKVEALLESDEEKKLFQKIGEQRKLYLSSRDAIN------KAKA 138 +AAA S + K+ + L S +E +L + +R RD I +A+ Sbjct: 83 VIDKAAAYRAKSEDAWKQYKGLPMSADEARLAADVDAKRTTLF--RDGIEPLVTALRARD 140 Query: 139 AGNIEEA-ERVLEKDFVPASNAYQDTMRQLVELQRKDIDETAKHIDIIAEDSRILLLALE 197 A +++A V+ FV S A L R ++ + S+ L + Sbjct: 141 AAAVDKAVMTVIPPMFVALSAAVD-------ALDRNQAEQAKAAYEGAVTRSQNFLWLII 193 Query: 198 GLILVLGVL----CAWYLTVGITRPINSAVTISRRVAEGDLTSDVQVGSKDETGQLLQAL 253 G I+V G+L CA+ L I+ P++ + ++ G+LT + V S+DE G L + L Sbjct: 194 GAIVV-GILSAVACAFGLDRAISVPLSRMLGSFGEISRGNLTEQIVVTSQDEMGALTRGL 252 Query: 254 QDMNISLRGIVSNVRTGTDTIATASSEIAAGNLDLSSRTEQQASALEETASSMEELISTV 313 QDM L + +R G+D+IA+A+ +IAAGN+DLS RTE+QAS+LEETASSMEEL S V Sbjct: 253 QDMQRGLIRTIETMRGGSDSIASATKQIAAGNMDLSQRTEEQASSLEETASSMEELTSIV 312 Query: 314 KQNADNARQANQLAVSASEIATQGGGVVGQVVDTMGAINDSSRKIVDIISVIDGIAFQTN 373 KQNADNARQA+ LAV+AS+IA +GG VVG+VV+TM INDSS+KI DII VI+GIAFQTN Sbjct: 313 KQNADNARQASTLAVNASDIAVKGGEVVGRVVETMAGINDSSKKIADIIGVIEGIAFQTN 372 Query: 374 ILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLINDSVEKVGNGSKLVE 433 ILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEIK LI+DSV +V NG+ LV Sbjct: 373 ILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELISDSVGRVENGTTLVA 432 Query: 434 QAGATMAEVVNSVRRVTDIVAEISSASEEQTTGIEQINHAITQMDQVTQQNAALVEEAAA 493 +AG + EVV +V+RVTDI+ EIS+AS+EQ++GIEQ+N A+ QMD+VTQQNAALVEEAAA Sbjct: 433 EAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQVNQAVNQMDEVTQQNAALVEEAAA 492 Query: 494 AAASMQSQADSLAQLVSVFTL 514 AA S++ QA L + V+ F L Sbjct: 493 AAQSLEEQARLLRETVASFRL 513