BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0114.p         (70 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_penP [V] COG2367 Beta-lactamase class A Bsu Bacillus subtilis       71   5e-13
SMc00047 Non COG                                                       63   2e-10

>BS_penP [V] COG2367 Beta-lactamase class A Bsu Bacillus subtilis
          Length = 306

 Score = 71.2 bits (173), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 44/68 (64%)

Query: 1   VRAGMQQGWKVGDKTGSGDYGTTNTVAIIWPPQRAPLLASIYLTETKASEEQRNAVLAEV 60
           +RAG   GW+VGDK+G+G YGT N +AI+WPP RAP++ +I            NA++AE 
Sbjct: 238 IRAGAPIGWEVGDKSGAGSYGTRNDIAIVWPPNRAPIVVAILSNRFTKDANYDNALIAEA 297

Query: 61  GKLIVGGL 68
            K+++  L
Sbjct: 298 AKVVLNDL 305


>SMc00047 Non COG
          Length = 296

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 41/64 (64%)

Query: 1   VRAGMQQGWKVGDKTGSGDYGTTNTVAIIWPPQRAPLLASIYLTETKASEEQRNAVLAEV 60
           +RAG+ Q W++GDKTG+   G  + +A+ WP  R P+L  +Y  E KA  +  N V A++
Sbjct: 229 LRAGLPQDWRIGDKTGTSMTGAVSDIAVAWPEGRGPILICVYTGEAKAPLDDLNPVFADI 288

Query: 61  GKLI 64
           G+++
Sbjct: 289 GRIV 292