BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0112.p         (60 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4109 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...    92   4e-19
AGl3463 [K] COG0583 Transcriptional regulator Atu Agrobacterium ...    86   2e-17
SMa2293 [K] COG0583 Transcriptional regulator Sme Sinorhizobium ...    84   6e-17
CC1117 Non COG                                                         79   3e-15
mlr1832 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ...    76   2e-14

>PA4109 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 296

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 49/56 (87%)

Query: 2  HLPLNALRAFEVAARHLSFTSAADELNVTQTAVSMQVKNLEERLGVTLFRRLPRGL 57
          HLPLNALRAFE +ARHLSFT AA EL VTQ AVS QVK+LEERLGV LF+RLPRGL
Sbjct: 5  HLPLNALRAFEASARHLSFTRAAIELCVTQAAVSHQVKSLEERLGVALFKRLPRGL 60


>AGl3463 [K] COG0583 Transcriptional regulator Atu Agrobacterium
          tumefaciens strain C58 (Cereon)
          Length = 292

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 46/55 (83%)

Query: 3  LPLNALRAFEVAARHLSFTSAADELNVTQTAVSMQVKNLEERLGVTLFRRLPRGL 57
          LPLN LRAFE +ARHLSFT AA EL VTQ AVS QVK LE+RLGV LF+RLPRGL
Sbjct: 6  LPLNGLRAFEASARHLSFTRAAIELCVTQAAVSQQVKGLEKRLGVALFQRLPRGL 60


>SMa2293 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 294

 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/56 (75%), Positives = 47/56 (83%)

Query: 3  LPLNALRAFEVAARHLSFTSAADELNVTQTAVSMQVKNLEERLGVTLFRRLPRGLA 58
          LPLNALRAFE +ARH SFT A  EL V+QTA+S QVK+LE+ LGV LFRRLPRGLA
Sbjct: 6  LPLNALRAFEASARHCSFTRAGLELRVSQTAISHQVKSLEDLLGVKLFRRLPRGLA 61


>CC1117 Non COG
          Length = 340

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 45/54 (83%)

Query: 4  PLNALRAFEVAARHLSFTSAADELNVTQTAVSMQVKNLEERLGVTLFRRLPRGL 57
          PLNALRAFE AARHL+F+ AADEL+VT  AVS Q++NLE+ +G  LF+R P+GL
Sbjct: 34 PLNALRAFEAAARHLNFSRAADELSVTPGAVSQQIQNLEDYVGAALFKRTPKGL 87


>mlr1832 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 299

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query: 4  PLNALRAFEVAARHLSFTSAADELNVTQTAVSMQVKNLEERLGVTLFRRLPRGLA 58
          PLNALRAFE +ARHL+F  AA+ELNVTQ AV+  ++ LE  LG  LF RLPRGLA
Sbjct: 10 PLNALRAFEASARHLNFRIAAEELNVTQGAVAQHIRGLETHLGTKLFERLPRGLA 64