BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0105.p         (198 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2324 [GEPR] COG0477 Permeases of the major facilitator superf...   149   4e-36
Rv1634 [GEPR] COG0477 Permeases of the major facilitator superfa...   142   4e-34
MT1670 [GEPR] COG0477 Permeases of the major facilitator superfa...   142   4e-34
SMc01217 [GEPR] COG0477 Permeases of the major facilitator super...   112   6e-25
AGc1716 [GEPR] COG0477 Permeases of the major facilitator superf...   109   3e-24

>RSc2324 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso
           Ralstonia solanacearum
          Length = 475

 Score =  149 bits (376), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 117/175 (66%)

Query: 5   TAVSTSWSELLTGRNLWRSVALTGGVALHAINVHIVTTILPSVVRDIGGLAYYAWNITLF 64
           TA   SW +L  G N  R + L  GVALHAIN+++ TTILPSVV DIGG+A+YAWN TLF
Sbjct: 7   TADDASWLDLFRGANALRVLVLAAGVALHAINLYLTTTILPSVVDDIGGVAFYAWNTTLF 66

Query: 65  VVASIVGSALTSKLLDKLGPRRAYLLGLAVFTLGSILCATALSMPWMLAGRSVQGLGGGL 124
           +VASI G+A+ ++++  LGPR AYLLG  VF  GS LCA A  M  +L GR +QGLGGG+
Sbjct: 67  IVASITGAAVAAQVIQHLGPRGAYLLGAMVFGGGSALCALAPIMQVLLVGRVLQGLGGGV 126

Query: 125 LAALGYALIPVLFEQRLWSRAVALESGMWGVATLRRRACWSPGSISXRWRRACWS 179
           L +  Y L+  +  + LW RA+AL SGMWG+ATL   A     +    WR A WS
Sbjct: 127 LLSAPYVLMRSVLPEPLWPRALALLSGMWGIATLLGPAVGGIFAQYATWRLAFWS 181


>Rv1634 [GEPR] COG0477 Permeases of the major facilitator superfamily Mtu
           Mycobacterium tuberculosis H37Rv
          Length = 471

 Score =  142 bits (359), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 108/157 (68%), Gaps = 2/157 (1%)

Query: 3   TETAVST-SWSELLTGRNLWRSVALTGGVALHAINVHIVTTILPSVVRDIGGLAYYAWNI 61
           TETA  T SW ELL+ R L  S+ L GGVAL+A N  +  ++LPS + DIGG   YAW  
Sbjct: 2   TETASETGSWRELLS-RYLGTSIVLAGGVALYATNEFLTISLLPSTIADIGGSRLYAWVT 60

Query: 62  TLFVVASIVGSALTSKLLDKLGPRRAYLLGLAVFTLGSILCATALSMPWMLAGRSVQGLG 121
           TL++V S+V +   + +L ++G R +YL+GLAVF L S++CA A SM  ++AGR++QG+ 
Sbjct: 61  TLYLVGSVVAATTVNTMLLRVGARSSYLMGLAVFGLASLVCAAAPSMQILVAGRTLQGIA 120

Query: 122 GGLLAALGYALIPVLFEQRLWSRAVALESGMWGVATL 158
           GGLLA LGYALI     + LW+R  AL S MWGVATL
Sbjct: 121 GGLLAGLGYALINSTLPKSLWTRGSALVSAMWGVATL 157


>MT1670 [GEPR] COG0477 Permeases of the major facilitator superfamily MtC
           Mycobacterium tuberculosis CDC1551
          Length = 471

 Score =  142 bits (359), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 108/157 (68%), Gaps = 2/157 (1%)

Query: 3   TETAVST-SWSELLTGRNLWRSVALTGGVALHAINVHIVTTILPSVVRDIGGLAYYAWNI 61
           TETA  T SW ELL+ R L  S+ L GGVAL+A N  +  ++LPS + DIGG   YAW  
Sbjct: 2   TETASETGSWRELLS-RYLGTSIVLAGGVALYATNEFLTISLLPSTIADIGGSRLYAWVT 60

Query: 62  TLFVVASIVGSALTSKLLDKLGPRRAYLLGLAVFTLGSILCATALSMPWMLAGRSVQGLG 121
           TL++V S+V +   + +L ++G R +YL+GLAVF L S++CA A SM  ++AGR++QG+ 
Sbjct: 61  TLYLVGSVVAATTVNTMLLRVGARSSYLMGLAVFGLASLVCAAAPSMQILVAGRTLQGIA 120

Query: 122 GGLLAALGYALIPVLFEQRLWSRAVALESGMWGVATL 158
           GGLLA LGYALI     + LW+R  AL S MWGVATL
Sbjct: 121 GGLLAGLGYALINSTLPKSLWTRGSALVSAMWGVATL 157


>SMc01217 [GEPR] COG0477 Permeases of the major facilitator superfamily Sme
           Sinorhizobium meliloti
          Length = 489

 Score =  112 bits (279), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/132 (48%), Positives = 83/132 (62%)

Query: 10  SWSELLTGRNLWRSVALTGGVALHAINVHIVTTILPSVVRDIGGLAYYAWNITLFVVASI 69
           SWSELL  R+L  +V L  GVAL A N   V+T LP+ V + GG A  +W  TL++V +I
Sbjct: 25  SWSELLRPRHLAATVTLCLGVALFAFNEFFVSTALPTAVAEFGGAALLSWAFTLYLVFAI 84

Query: 70  VGSALTSKLLDKLGPRRAYLLGLAVFTLGSILCATALSMPWMLAGRSVQGLGGGLLAALG 129
           VG AL + L  + G R   ++   VF  G+ +   A SMP +LAGR +QG G G++AAL 
Sbjct: 85  VGGALAASLKVRFGARNTLIVAALVFATGTAIATMASSMPQVLAGRVLQGFGEGIIAALC 144

Query: 130 YALIPVLFEQRL 141
           YALIP LF QRL
Sbjct: 145 YALIPELFPQRL 156


>AGc1716 [GEPR] COG0477 Permeases of the major facilitator superfamily Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 528

 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 84/155 (54%)

Query: 4   ETAVSTSWSELLTGRNLWRSVALTGGVALHAINVHIVTTILPSVVRDIGGLAYYAWNITL 63
           E      W ELL+G NL     ++ G+ LHA N   V T LP  V DIGG  +Y+W  +L
Sbjct: 68  EMVEKNGWGELLSGANLSLLTVISSGIGLHAFNQFAVVTALPVAVNDIGGAGFYSWAYSL 127

Query: 64  FVVASIVGSALTSKLLDKLGPRRAYLLGLAVFTLGSILCATALSMPWMLAGRSVQGLGGG 123
           + V S+ G        ++ G R   LL   +F+ GS+L A A    W++ GR++QG+  G
Sbjct: 128 YFVGSVAGGVTAVLFRERFGARAILLLCCLIFSFGSVLSAIAGDFLWVVVGRALQGVADG 187

Query: 124 LLAALGYALIPVLFEQRLWSRAVALESGMWGVATL 158
           L+ A+ Y+LIP  F   L  +  A+E+ +W VA+ 
Sbjct: 188 LIVAVCYSLIPAGFRSGLLPKVFAIEAAIWAVASF 222