BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0095.p (603 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 635 0.0 RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 589 e-168 RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 482 e-135 RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 350 8e-96 RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 337 3e-92 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/513 (65%), Positives = 410/513 (79%) Query: 2 KLSFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELA 61 KLSF+Q+LW PL SLIAL +S+FNAYQA IR+EER+ +L++V +A++ +K+Y +LA Sbjct: 9 KLSFRQKLWLPLAFSLIALTLMSVFNAYQARGIRIEERRNNLVSVTSMALNLVKQYDDLA 68 Query: 62 KNGTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAG 121 + G ++KE AQ+ AL R + +RY DGYF+++ S V VMHPIKPE GKD T FKD G Sbjct: 69 RGGVLTKEAAQQQALDRFRSLRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQTGFKDAQG 128 Query: 122 NQVFVDIAKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 N V+V++ AA P GGF +Y+WP VG VPKT++A RYEPWDW+ +TG YMDD+NAA Sbjct: 129 NSVYVNLTSAARQPNGGFTSYVWPHVGGTALVPKTAFAQRYEPWDWVFSTGAYMDDINAA 188 Query: 182 FTQSVYQLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTA 241 F S+Y+ ++ +L+ L V NR + R +GGDP AAE+ANRI+ GDL++ I T Sbjct: 189 FMTSLYESGGLLLLAGAVLVLLAGVANRGLQRALGGDPAYAAEVANRIAGGDLSVEIATR 248 Query: 242 PGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEET 301 P D SL+YA RMR +L TI I+ +++TI TA+ EIASGNLDLSSRTEQQA SLEET Sbjct: 249 PDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSLEET 308 Query: 302 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 361 ASAMEEL STV+QNADNA QANQLAVSAS+VA++GG VVS+VV+TMGSIN SSRKIVDII Sbjct: 309 ASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVDII 368 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRS+AAAKEIK LIDDSV Sbjct: 369 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSV 428 Query: 422 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQ 481 + VD GS LV++AG TM E+VASV+RVTDIVGEI++ASQEQ +GI EV A+TQ+D+ TQ Sbjct: 429 TNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDATQ 488 Query: 482 QNAALVEQAAAAAQSLQDQAATLAQLVGRFKLD 514 QNAALVEQAAAAAQSLQ+QA +L Q+V +F+LD Sbjct: 489 QNAALVEQAAAAAQSLQEQADSLTQVVAQFRLD 521 >RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 589 bits (1518), Expect = e-168, Method: Compositional matrix adjust. Identities = 313/512 (61%), Positives = 405/512 (79%), Gaps = 1/512 (0%) Query: 2 KLSFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELA 61 +L+ +Q+LW PLV+S + LLAI+L++A+ A +R+EER++DL NV+ A S IKEYG+LA Sbjct: 3 RLTLRQKLWLPLVLSWLGLLAITLWSAWSARTLRMEERQRDLQNVSATAFSVIKEYGQLA 62 Query: 62 KNGTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAG 121 + G M+ EEA+ +AR+K MRYGADGYFS+S + AV+VMHPIKPE+ GK+++ DPAG Sbjct: 63 QEGKMTVEEAKAQTMARLKTMRYGADGYFSLSTTDAVSVMHPIKPEMVGKNMSAVTDPAG 122 Query: 122 NQVFVDIAKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 N +F DIA+ A + GGF+ Y+WPK GS P PK +Y Y+PWDW +TTG+Y+DDV+AA Sbjct: 123 NHLFTDIARTAKAG-GGFVRYLWPKPGSSTPEPKLTYVAYYQPWDWSMTTGLYIDDVDAA 181 Query: 182 FTQSVYQLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTA 241 F S+ Q + ++ G +++ +V R + R +GGDP AA+IA RI+ GDL + + T Sbjct: 182 FRASLLQSLGLLLGVGLLMTLVVATLARGLQRQLGGDPAYAADIAARIAAGDLAMRVETR 241 Query: 242 PGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEET 301 PGD S+++A +M+ LT TIS+IK SAD+IA+A+ +IA+GN DLS RTEQQA SLEET Sbjct: 242 PGDRDSVLFAMAQMQRELTGTISHIKHSADSIASATQQIAAGNADLSQRTEQQASSLEET 301 Query: 302 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 361 AS+MEELTS VKQNADNARQA+ LAV+AS+VA++GG VV +VV+TM IN+SS+KI DII Sbjct: 302 ASSMEELTSIVKQNADNARQASTLAVNASDVAVKGGEVVGRVVETMAGINDSSKKIADII 361 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 421 VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRS+ AAKEIK LI DSV Sbjct: 362 GVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELIGDSV 421 Query: 422 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQ 481 +V G+ LV++AGA +DEVV +VKRVTDI+GEIS+AS EQS+GI +V QA+ QMD+ TQ Sbjct: 422 GRVRNGTALVEEAGAVIDEVVVAVKRVTDIMGEISAASAEQSSGIEQVNQAVNQMDQVTQ 481 Query: 482 QNAALVEQAAAAAQSLQDQAATLAQLVGRFKL 513 QNAALVEQAAAAA SL++QA L VGRF++ Sbjct: 482 QNAALVEQAAAAALSLEEQAQVLRTAVGRFQM 513 >RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 482 bits (1241), Expect = e-135, Method: Compositional matrix adjust. Identities = 271/513 (52%), Positives = 360/513 (70%), Gaps = 4/513 (0%) Query: 2 KLSFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELA 61 + + K +L L + + L+ + +++A + L+ERK L N+ A K Y A Sbjct: 3 QWTLKAKLRLALALMWLGLIGVGVWSAMETRATMLDERKTGLQNLVDAAEGIAKLYHAKA 62 Query: 62 KNGTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAG 121 ++G M ++EA+KTALA + +RYG GY V +S + MHP ++ GK FKDP G Sbjct: 63 QSGAMGEDEARKTALATLASLRYGTTGYLFVVDSQLILQMHPTLADMVGKSTAQFKDPTG 122 Query: 122 NQVFVDIAKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 ++ I AA GF Y GS +PK Y R+ PWDW +++ V++ +V A Sbjct: 123 KPLYPAIVNAAKDKGYGFAEYQGRLPGSDTALPKIGYVKRFAPWDWNISSAVFLQEVETA 182 Query: 182 FTQS-VYQLIAI-VFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVIN 239 + +S + LIAI V G ++ L +++ R++ R +GG+P A EIA RI+DGDL + + Sbjct: 183 YVRSLIANLIAILVVGGAVTLAMFLII--RNVQRGLGGEPAYATEIARRIADGDLAVRVQ 240 Query: 240 TAPGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLE 299 T P D +S+++A RM+ LT TI +IK+SAD+IA+A+ +IA+GN DLS RTE+QA SLE Sbjct: 241 TRPDDRNSMLFAMARMQQQLTGTIGHIKTSADSIASATQQIATGNADLSQRTEEQASSLE 300 Query: 300 ETASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVD 359 ETAS+MEELTS VKQNADNARQA+ LAV+AS++A++GG VV +VVDTM IN+SS+KI D Sbjct: 301 ETASSMEELTSIVKQNADNARQASTLAVNASDIAVKGGEVVGRVVDTMAGINDSSKKIAD 360 Query: 360 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDD 419 II VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRS+ AAKEIK LI D Sbjct: 361 IIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKVLISD 420 Query: 420 SVSKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEG 479 SV +V+ G+ LV +AG +DEVV +VKRVTDI+GEIS+AS EQS+GI +V QA+ QMDE Sbjct: 421 SVGRVENGTTLVAEAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQVNQAVNQMDEV 480 Query: 480 TQQNAALVEQAAAAAQSLQDQAATLAQLVGRFK 512 TQQNAALVE+AAAAA SL++QA L V F+ Sbjct: 481 TQQNAALVEEAAAAALSLEEQATLLRDAVASFR 513 >RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 350 bits (897), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 187/298 (62%), Positives = 237/298 (79%) Query: 216 GGDPGDAAEIANRISDGDLTLVINTAPGDTSSLVYAFKRMRDSLTHTISNIKSSADTIAT 275 GG+P AA+ + ++ GDL+ VI D +SL+ K M+ SL+ ++ ++++A+++AT Sbjct: 216 GGEPSVAAQAVSAMAQGDLSRVIAVDADDRTSLLAKLKEMQASLSGIVATVRNNAESVAT 275 Query: 276 ASSEIASGNLDLSSRTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASEVAIQ 335 AS++IA GN DLS RTEQQA +L+ET++ M+EL STV NA+NARQANQLA AS VA + Sbjct: 276 ASAQIAQGNQDLSHRTEQQASALQETSATMDELGSTVGNNAENARQANQLASGASSVAAE 335 Query: 336 GGAVVSQVVDTMGSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 395 GG VVSQVV M IN+ S+KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 336 GGEVVSQVVGMMKGINDGSKKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 395 Query: 396 ASEVRSLAQRSSAAAKEIKTLIDDSVSKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEI 455 A+EVRSLAQRS+AAAKEIK LI SV +V+ G+ LV +AGATM+++V +++RV++IV EI Sbjct: 396 AAEVRSLAQRSAAAAKEIKALITSSVEQVEQGTTLVDRAGATMEQIVGAIQRVSNIVAEI 455 Query: 456 SSASQEQSAGIGEVGQAITQMDEGTQQNAALVEQAAAAAQSLQDQAATLAQLVGRFKL 513 SSAS EQS+G+ +VGQA++QMDE TQQNAALVEQ+AAAA SLQ QA L Q V FKL Sbjct: 456 SSASAEQSSGVSQVGQAVSQMDEATQQNAALVEQSAAAASSLQGQAQQLVQAVAVFKL 513 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 337 bits (865), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 190/329 (57%), Positives = 244/329 (74%), Gaps = 5/329 (1%) Query: 188 QLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTAPGDT-S 246 Q+I + +++ IA R+I R I A +A ++ G+LT ++ D Sbjct: 191 QMIVLAVLATLLAIATGAFITRTITRPIN----HAMHLAEAVAQGNLTHLLEVDTQDEIG 246 Query: 247 SLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEETASAME 306 L+ A K M ++L +S ++ DTI ASSE+ASGN+DLSSRTEQQA SLEETA+AME Sbjct: 247 RLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSLEETAAAME 306 Query: 307 ELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDIISVIDG 366 +LTSTVKQNADNA++A++LA +AS VA +GG V + + TM +IN SSRKIVDII VIDG Sbjct: 307 QLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDIIGVIDG 366 Query: 367 IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSVSKVDV 426 IAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRS+AAAKEIK LI+DSV V Sbjct: 367 IAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDSVGHVST 426 Query: 427 GSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQQNAAL 486 G+ V++AG + +VVA ++ VT+IV EIS++S+EQS GI ++ +AITQMD+ TQ+NA+L Sbjct: 427 GTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKATQENASL 486 Query: 487 VEQAAAAAQSLQDQAATLAQLVGRFKLDA 515 VE++A AAQ+LQDQA LA +V FKL A Sbjct: 487 VEESATAAQALQDQANQLADMVSTFKLHA 515