BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0086.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr5133 [R] COG2351 Transthyretin-like protein Mlo Mesorhizobium...   103   1e-22
PA1518 [R] COG2351 Transthyretin-like protein Pae Pseudomonas ae...   103   1e-22
SMb20872 [R] COG2351 Transthyretin-like protein Sme Sinorhizobiu...    92   6e-19
RSc2116 [R] COG2351 Transthyretin-like protein Rso Ralstonia sol...    92   6e-19
AGc4223 [R] COG2351 Transthyretin-like protein Atu Agrobacterium...    86   3e-17

>mlr5133 [R] COG2351 Transthyretin-like protein Mlo Mesorhizobium loti
          Length = 124

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 58/83 (69%)

Query: 2  GKLSTHVLDVTQGKPGAGVKVALFAVRGNEKVLLKNTVTNSDGRCDAPLLQGDELLAGRY 61
          G+L+THVLD   GKP AG+ +AL+ + G+ +  LK   TN+DGRCDA LL G E  AG Y
Sbjct: 10 GRLTTHVLDTATGKPAAGLSIALYRLDGSARTHLKTVATNADGRCDAALLAGAEFRAGEY 69

Query: 62 ELVFGAGDYFAGQGVQLPAPRFV 84
          ELVF AGDY  GQG +LP P F+
Sbjct: 70 ELVFAAGDYLRGQGTKLPEPAFL 92


>PA1518 [R] COG2351 Transthyretin-like protein Pae Pseudomonas aeruginosa
          Length = 126

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 60/84 (71%)

Query: 1  MGKLSTHVLDVTQGKPGAGVKVALFAVRGNEKVLLKNTVTNSDGRCDAPLLQGDELLAGR 60
          MG+L+THVLD   G PG G+K+ L+ V G +  L+  T+TN DGRCD P+LQG++   G 
Sbjct: 10 MGRLTTHVLDSAHGCPGHGIKIELYRVEGQQLELIATTLTNHDGRCDQPVLQGEDFRPGV 69

Query: 61 YELVFGAGDYFAGQGVQLPAPRFV 84
          Y+LVF AGDY+  +GVQLP P F+
Sbjct: 70 YQLVFNAGDYYRARGVQLPEPAFL 93


>SMb20872 [R] COG2351 Transthyretin-like protein Sme Sinorhizobium meliloti
          Length = 129

 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 56/83 (67%)

Query: 2  GKLSTHVLDVTQGKPGAGVKVALFAVRGNEKVLLKNTVTNSDGRCDAPLLQGDELLAGRY 61
          G+L+THVLD   G+P  G+K+ L+ + G+ + L++   TNSDGR D PL++G     G Y
Sbjct: 14 GRLTTHVLDTALGRPAHGLKIDLYRLEGDARHLIRTVHTNSDGRVDGPLMEGAGFATGTY 73

Query: 62 ELVFGAGDYFAGQGVQLPAPRFV 84
          ELVF AGDYF   GV+LP P F+
Sbjct: 74 ELVFHAGDYFRSAGVKLPDPAFL 96


>RSc2116 [R] COG2351 Transthyretin-like protein Rso Ralstonia solanacearum
          Length = 117

 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 54/84 (64%)

Query: 1  MGKLSTHVLDVTQGKPGAGVKVALFAVRGNEKVLLKNTVTNSDGRCDAPLLQGDELLAGR 60
          MG+L+THVLD   G PG  + + LF +  N +  +K   TN DGRC+APLL+G+ L AG 
Sbjct: 1  MGRLTTHVLDTAAGTPGKDLAITLFKIVNNLRQPIKTVRTNHDGRCEAPLLEGEALQAGI 60

Query: 61 YELVFGAGDYFAGQGVQLPAPRFV 84
          YEL F  GDY+   GV LP P F+
Sbjct: 61 YELDFAVGDYYRAAGVSLPDPAFL 84


>AGc4223 [R] COG2351 Transthyretin-like protein Atu Agrobacterium
          tumefaciens strain C58 (Cereon)
          Length = 118

 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 1  MGKLSTHVLDVTQGKPGAGVKVALFAVRGNEKVLLKNTVTNSDGRCDA-PLLQGDELLAG 59
          M  L+THVLD   G P  G+ + L+ + G+ +  LK   TNSDGR D  PLL GD   AG
Sbjct: 1  MTGLTTHVLDAAHGVPAEGLTIELYRLSGDRREKLKTVKTNSDGRVDGGPLLVGDSFKAG 60

Query: 60 RYELVFGAGDYFAGQGVQLPAPRFV 84
           YELVF AGDY  G+GVQL  P F+
Sbjct: 61 EYELVFHAGDYLRGRGVQLAEPAFL 85