BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0080.p         (200 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0944 Non COG                                                       176   4e-44
PM0119 [S] COG3028 Uncharacterized protein conserved in bacteria...   125   5e-29
NMA1049 [S] COG3028 Uncharacterized protein conserved in bacteri...   121   1e-27
VC2536 [S] COG3028 Uncharacterized protein conserved in bacteria...   119   5e-27
YPO3691 [S] COG3028 Uncharacterized protein conserved in bacteri...   118   1e-26

>RSc0944 Non COG
          Length = 208

 Score =  176 bits (445), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/157 (54%), Positives = 116/157 (73%)

Query: 24  SKSQLKRDMTALQKLGEELVAEPRDRVKRVPMPEDVRDVILECQQIKDHEGRRRQMQFVG 83
           SKSQ KR++TALQ LG  L A P+DR+ +VP+PE + D + E ++I  HEG+RRQMQ++G
Sbjct: 34  SKSQRKREVTALQDLGTALEALPKDRLAKVPLPETLADALREARRITSHEGKRRQMQYIG 93

Query: 84  KKMRTLEEHEIAAIQKTLDSWRGLSKADTASMHALERRREKLLKDDNALTELLAQHPDLD 143
           K MR L + +I AI++ L ++ G SKA+TA +HA+ER R++LL DD A+TE +A HPD D
Sbjct: 94  KLMRALTDDDIEAIRRVLATFVGASKAETARLHAIERWRDRLLADDGAITEFIAAHPDTD 153

Query: 144 AQHLRTLIRNARKEQAENKPPKAYREIFQILKQLQAA 180
            Q LRTL+RNARKE    KPPK+ RE+FQ +KQ  A 
Sbjct: 154 VQALRTLVRNARKEAQLGKPPKSSRELFQAVKQALAG 190


>PM0119 [S] COG3028 Uncharacterized protein conserved in bacteria Pmu
           Pasteurella multocida
          Length = 180

 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 103/152 (67%), Gaps = 4/152 (2%)

Query: 24  SKSQLKRDMTALQKLGEELVAEPRDRVKRVPMPEDVRDVILECQQIKDHEGRRRQMQFVG 83
           SKS++KRD  AL+KLGE+LV   + +++++P+ E + + I   Q+++  E RRRQ+Q++G
Sbjct: 27  SKSEIKRDAEALKKLGEKLVDLTKAKLEKIPLEEKLLEAIELAQRLQ-KEARRRQLQYIG 85

Query: 84  KKMRTLEEHEIAAIQKTLDSWRGLSKADTASMHALERRREKLLKDDNALTELLAQHPDLD 143
           K +R ++   +  IQ  L+      +   A +H LE  R+ L+ +  A+T+ L QHPD D
Sbjct: 86  KLLRNID---VEPIQDALEKLENKHQQQQAMLHKLEMLRDTLIDNPEAITQFLEQHPDAD 142

Query: 144 AQHLRTLIRNARKEQAENKPPKAYREIFQILK 175
            QHLR L+R A+KE+A+NKPPKAYREIFQ LK
Sbjct: 143 RQHLRNLVRAAQKEKAQNKPPKAYREIFQYLK 174


>NMA1049 [S] COG3028 Uncharacterized protein conserved in bacteria NmA
           Neisseria meningitidis Z2491
          Length = 191

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/184 (38%), Positives = 105/184 (57%), Gaps = 10/184 (5%)

Query: 1   MPNPNRG---SCGFQSNE----FEQEYDRPSKSQLKRDMTALQKLGEELVAEPRDRVKRV 53
           MP+   G    C    N     FEQE +  SK+Q+K+ M  LQ LG EL     D +K++
Sbjct: 1   MPSERGGILLKCAIGKNSRTKMFEQEDEWISKTQMKKQMNGLQDLGMELTKLSNDTLKKI 60

Query: 54  PMPEDVRDVILECQQIKDHEGRRRQMQFVGKKMRTLEEHEIAAIQKTLDSWRGLSKADTA 113
            + ED+ + ++  ++I  +   +RQ QF+G+ MR   + + A I+  L   RG   A  A
Sbjct: 61  GLDEDLYEAVVTYKKITSNGALKRQAQFIGRLMR---DTDPAPIEAFLAKLRGDDAAHNA 117

Query: 114 SMHALERRREKLLKDDNALTELLAQHPDLDAQHLRTLIRNARKEQAENKPPKAYREIFQI 173
            +  +E+ R +LL DD ALT+ ++  P  DA  LRTLIRN +KEQ +NKPPK +R +FQ 
Sbjct: 118 FLQRVEQARVRLLADDGALTQFMSDFPHADAGKLRTLIRNTKKEQEQNKPPKNFRALFQE 177

Query: 174 LKQL 177
           LK +
Sbjct: 178 LKTV 181


>VC2536 [S] COG3028 Uncharacterized protein conserved in bacteria Vch
           Vibrio cholerae
          Length = 193

 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 101/154 (65%), Gaps = 5/154 (3%)

Query: 24  SKSQLKRDMTALQKLGEELVAEPRDRVKRVPMPEDVRDVILECQQIKDHEGRRRQMQFVG 83
           S+++LK DM ALQKLGEELV      + + P+PED+ + I + Q+ K+ E RRRQ+Q++G
Sbjct: 24  SRTELKNDMLALQKLGEELVELKPSALAKFPLPEDLAEAIKDAQRFKN-EARRRQLQYIG 82

Query: 84  KKMRTLEEHEIAAIQKTLDSWRGLSKADTASMHALERRREKLLKD-DNALTELLAQHPDL 142
           K MR ++      +Q  LD  R      TA +H LE+ R++++ + D+A+   + Q+P+ 
Sbjct: 83  KLMRHIDPE---PLQAALDKLRNKHSQTTALLHKLEQLRDRIVAEGDSAIEVAMEQYPEA 139

Query: 143 DAQHLRTLIRNARKEQAENKPPKAYREIFQILKQ 176
           D Q LR L R A KE+A NKPPK+ REIFQ+LK+
Sbjct: 140 DRQRLRLLARQASKEKAGNKPPKSSREIFQLLKE 173


>YPO3691 [S] COG3028 Uncharacterized protein conserved in bacteria Ype
           Yersinia pestis
          Length = 182

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 100/155 (64%), Gaps = 5/155 (3%)

Query: 24  SKSQLKRDMTALQKLGEELVAEPRDRVKRVPMPEDVRDVILECQQIKDHEGRRRQMQFVG 83
           SKS++KRD  AL+ LG ELV   ++ ++R+P+ ED+   I   Q+IK  EGRRRQ+Q +G
Sbjct: 27  SKSEIKRDAEALKDLGTELVDLGKNALERIPLDEDLLAAIELAQKIK-KEGRRRQLQLIG 85

Query: 84  KKMRTLEEHEIAAIQKTLDSWRGLSKADTASMHALERRREKLLKD-DNALTELLAQHPDL 142
           K +R     ++  IQ  LD  +       +  H LE  R++L+ + D A+  +L  +PD 
Sbjct: 86  KMLRA---RDVEPIQTALDKLKNRHNQQISLFHKLETLRDRLIAEGDEAIPTVLELYPDA 142

Query: 143 DAQHLRTLIRNARKEQAENKPPKAYREIFQILKQL 177
           D Q LR+L+RNA+KEQA NKPPK++R+IF  L++L
Sbjct: 143 DRQQLRSLVRNAQKEQAANKPPKSFRQIFSYLREL 177