BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0070.p         (159 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2770 [R] COG1546 Uncharacterized protein (competence- and mit...   166   2e-41
PA3618 [R] COG1546 Uncharacterized protein (competence- and mito...   153   2e-37
STM2830 [R] COG1546 Uncharacterized protein (competence- and mit...   150   8e-37
ygaD [R] COG1546 Uncharacterized protein (competence- and mitomy...   148   4e-36
ZygaD [R] COG1546 Uncharacterized protein (competence- and mitom...   147   9e-36

>RSc2770 [R] COG1546 Uncharacterized protein (competence- and
           mitomycin-induced) Rso Ralstonia solanacearum
          Length = 166

 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/153 (53%), Positives = 106/153 (69%)

Query: 6   DLAARVGLALKARNLLLSTAESCTGGGVAQAITEIAGSSEWFDCGFITYSNASKNELLEI 65
            LA  VG  L  R+L+++TAESCT G V  AIT+I G+S WF+ GF+TYSN +K+++L +
Sbjct: 9   QLAELVGDTLHKRSLMVATAESCTAGLVGAAITDIPGASAWFERGFVTYSNEAKSQMLGV 68

Query: 66  SEALIAQHGAVSEEIAAAMAEGAIANSSSDVAVSTTGIAGPGGAVPGKPVGTVCFGWKVG 125
              LI +HGAVSE +A AMAEGA+ NS + VA++ TG+AGP G  P KPVG VCFGW   
Sbjct: 69  PATLIREHGAVSEPVAHAMAEGAVLNSRAQVALAVTGVAGPTGGTPDKPVGMVCFGWSNR 128

Query: 126 DQTFTERLVFSGDRRAVREQAVVHSLQGLLRLL 158
            QT  E   F GDR+ +R QA  H+L+GLL  L
Sbjct: 129 LQTRVETRHFKGDRKQIRLQAAEHALRGLLDFL 161


>PA3618 [R] COG1546 Uncharacterized protein (competence- and
           mitomycin-induced) Pae Pseudomonas aeruginosa
          Length = 168

 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 102/153 (66%)

Query: 5   TDLAARVGLALKARNLLLSTAESCTGGGVAQAITEIAGSSEWFDCGFITYSNASKNELLE 64
           T LAAR+G +L+     +STAESCTGGG+A+AIT I GSS WF+ G++TYSN  K   LE
Sbjct: 9   TALAARLGESLRYLGEQVSTAESCTGGGIAEAITRIPGSSGWFEAGYVTYSNRQKTLQLE 68

Query: 65  ISEALIAQHGAVSEEIAAAMAEGAIANSSSDVAVSTTGIAGPGGAVPGKPVGTVCFGWKV 124
           + E+L    GAVS E+  AM  GA  +S +  AV+ +G+AGP G  P KPVGTV   W  
Sbjct: 69  VPESLFPAVGAVSREVVEAMVRGAQRHSGARFAVAVSGVAGPDGGSPEKPVGTVWLAWAD 128

Query: 125 GDQTFTERLVFSGDRRAVREQAVVHSLQGLLRL 157
           G++  +ER  F+GDR AVR Q V  +L GLLR+
Sbjct: 129 GERLVSERCQFNGDRDAVRRQTVATALTGLLRM 161


>STM2830 [R] COG1546 Uncharacterized protein (competence- and
           mitomycin-induced) Sty Salmonella typhimurium LT2
          Length = 165

 Score =  150 bits (380), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 79/151 (52%), Positives = 106/151 (70%), Gaps = 1/151 (0%)

Query: 7   LAARVGLALKARNLLLSTAESCTGGGVAQAITEIAGSSEWFDCGFITYSNASKNELLEIS 66
           L+ +VGLALKAR   ++TAESCTGG +A+AIT+IAGSS WF+ GF+TYSN +K +++ + 
Sbjct: 9   LSEQVGLALKARGATVTTAESCTGGWLAKAITDIAGSSAWFERGFVTYSNEAKAQMIGVR 68

Query: 67  EALIAQHGAVSEEIAAAMAEGAIANSSSDVAVSTTGIAGPGGAVPGKPVGTVCFGW-KVG 125
           E  +AQHGAVSE +   MA GA+  + +D AV+ +GIAGP G    KPVGTV F +  V 
Sbjct: 69  EETLAQHGAVSEPVVVEMAIGALKAARADFAVAISGIAGPDGGSEEKPVGTVWFAFASVS 128

Query: 126 DQTFTERLVFSGDRRAVREQAVVHSLQGLLR 156
            +  T R  FSGDR +VR QA  ++LQ L +
Sbjct: 129 GEGITRRECFSGDRESVRRQATTYALQTLWQ 159


>ygaD [R] COG1546 Uncharacterized protein (competence- and
           mitomycin-induced) Eco Escherichia coli K12
          Length = 165

 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 79/152 (51%), Positives = 103/152 (67%), Gaps = 1/152 (0%)

Query: 6   DLAARVGLALKARNLLLSTAESCTGGGVAQAITEIAGSSEWFDCGFITYSNASKNELLEI 65
            L+ +VG ALKAR   ++TAESCTGG VA+ IT+IAGSS WF+ GF+TYSN +K +++ +
Sbjct: 8   QLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEAKAQMIGV 67

Query: 66  SEALIAQHGAVSEEIAAAMAEGAIANSSSDVAVSTTGIAGPGGAVPGKPVGTVCFGWKVG 125
            E  +AQHGAVSE +   MA GA+  + +D AVS +GIAGP G    KPVGTV F +   
Sbjct: 68  REETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTVWFAFATA 127

Query: 126 D-QTFTERLVFSGDRRAVREQAVVHSLQGLLR 156
             +  T R  FSGDR AVR QA  ++LQ L +
Sbjct: 128 RGEGITRRECFSGDRDAVRRQATAYALQTLWQ 159


>ZygaD [R] COG1546 Uncharacterized protein (competence- and
           mitomycin-induced) EcZ Escherichia coli O157:H7 EDL933
          Length = 165

 Score =  147 bits (371), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 79/152 (51%), Positives = 103/152 (67%), Gaps = 1/152 (0%)

Query: 6   DLAARVGLALKARNLLLSTAESCTGGGVAQAITEIAGSSEWFDCGFITYSNASKNELLEI 65
            L+ +VG ALKAR   ++TAESCTGG VA+ IT+IAGSS WF+ GF+TYSN +K +++ +
Sbjct: 8   QLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEAKAQMIGV 67

Query: 66  SEALIAQHGAVSEEIAAAMAEGAIANSSSDVAVSTTGIAGPGGAVPGKPVGTVCFGWKVG 125
            E  +AQHGAVSE +   MA GA+  + +D AVS +GIAGP G    KPVGTV F +   
Sbjct: 68  REETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTVWFAFATA 127

Query: 126 D-QTFTERLVFSGDRRAVREQAVVHSLQGLLR 156
             +  T R  FSGDR AVR QA  ++LQ L +
Sbjct: 128 RGEGITLRECFSGDRDAVRRQATAYALQTLWQ 159