BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0065.p         (166 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0662 [S] COG3762 Predicted membrane protein Rso Ralstonia sol...   140   1e-33
PM0784 [S] COG3762 Predicted membrane protein Pmu Pasteurella mu...    67   2e-11
CC3457 [S] COG3762 Predicted membrane protein Ccr Caulobacter vi...    65   6e-11

>RSc0662 [S] COG3762 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 173

 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 103/163 (63%), Gaps = 1/163 (0%)

Query: 5   KRFLRHLRHTRASARASFPPATLQAIQTCIGAGEAKHRAEVRLVIEAALPLGAVLRNESS 64
           +R LRHL  T A AR +F PA L+ ++  +  GE +HR EVR+VIEA+LP+       + 
Sbjct: 11  RRALRHLTTTTAHARRAFSPADLRQLEAAVREGERRHRGEVRIVIEASLPVRDAWAGVTP 70

Query: 65  RARAHELFSHYRIWDTEENSGVLIYLNLADHRVEIVTDRTVGRVLKRADWESVCSTMTRS 124
           R RA  LF    +W+T E+ GVL+YLNLADH VEI+ DR +   ++   W ++C T+T  
Sbjct: 71  RQRARTLFGLLEVWNTHEHVGVLLYLNLADHAVEILADRGIAARVEPHAWRAICETITHG 130

Query: 125 FANGIYHDGVLEALAQLNGLLTVHFPQTSHQK-NEISNRPLML 166
           FA G+    VLEAL Q++ +L  HFP     + NE++++PL+L
Sbjct: 131 FAQGVAIGPVLEALGQIHAVLAAHFPSDGAPRANELADKPLVL 173


>PM0784 [S] COG3762 Predicted membrane protein Pmu Pasteurella multocida
          Length = 149

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 2/142 (1%)

Query: 24  PATLQAIQTCIGAGEAKHRAEVRLVIEAALPLGAVLRNESSRARAHELFSHYRIWDTEEN 83
           P   Q ++  I   E +  AE+R+ +E  +P  A +   +   RA ++F    +  TE +
Sbjct: 8   PIDKQQVEKAIFQLEKQTSAELRVYVERKIPRKAQVN--TGFERALQIFDELGMQATEAH 65

Query: 84  SGVLIYLNLADHRVEIVTDRTVGRVLKRADWESVCSTMTRSFANGIYHDGVLEALAQLNG 143
           +GVLIY+    H+  I+ D+ + + +  A W+  C  M   F    Y  G++ A+  +  
Sbjct: 66  NGVLIYVAFRAHQCAIIGDQGIHQYVGDAFWQQQCDLMISHFRQNAYTQGIIVAIDNIAK 125

Query: 144 LLTVHFPQTSHQKNEISNRPLM 165
            L  +FP     KNE+ N  ++
Sbjct: 126 ELANYFPIQPDDKNELDNEVII 147


>CC3457 [S] COG3762 Predicted membrane protein Ccr Caulobacter vibrioides
          Length = 255

 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 1/110 (0%)

Query: 52  ALPLGAVLRNESSRARAHELFSHYRIWDTEENSGVLIYLNLADHRVEIVTDRTVGRVLKR 111
           AL  GA+      RA   +  SH  +  T + +GVLI+  LA+HRVE++ D  + +    
Sbjct: 139 ALTPGALKTARVKRAAMEQFLSHG-LHVTRDRTGVLIFAALAEHRVEVIADEGIYKAAPN 197

Query: 112 ADWESVCSTMTRSFANGIYHDGVLEALAQLNGLLTVHFPQTSHQKNEISN 161
           A W  V + +      G   DG + A+A+  G+L  H P     +NE+S+
Sbjct: 198 AVWNEVVADLVAGLKRGKIADGFVAAVARTGGILAAHVPPRGDDRNELSD 247