BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0058.p         (217 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0410 [S] COG4291 Predicted membrane protein Rso Ralstonia sol...   188   6e-48
DR0351 [S] COG4291 Predicted membrane protein Dra Deinococcus ra...    91   3e-18
mlr0876 Non COG                                                        77   2e-14
BMEI1821 [S] COG4291 Predicted membrane protein Bme Brucella mel...    72   1e-12
SMc01272 [S] COG4291 Predicted membrane protein Sme Sinorhizobiu...    72   1e-12

>RSp0410 [S] COG4291 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 224

 Score =  188 bits (478), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 105/212 (49%), Positives = 140/212 (66%), Gaps = 4/212 (1%)

Query: 5   RHIVQVHPRLLIAVAVGA-AGYLLCADGALITRLLTGWNAGVACYLLTIWVMMFRSRAAD 63
           +  +   PRLL A+ +GA AG L   + + +TR+L GW+  V  YL+    MM R+    
Sbjct: 14  QRFIATRPRLLAALMLGAVAGILAPIESSRLTRILLGWDVAVWTYLVLAGAMMLRANPRR 73

Query: 64  TRRLAEKEDESAQLVLATVCVAAIASLAAIVIELADASHLESGQKLLHYAFTGGTVLGSW 123
            + +A +EDE A  VLA VCV  IAS+ AIV ELA A      Q + HYAFTG TVLG+W
Sbjct: 74  IQAVARREDERAAAVLAAVCVGVIASMVAIVFELATAKSAGHAQAV-HYAFTGVTVLGAW 132

Query: 124 FLIGTVFTLHYARLFYAQDDDAEPPLRFADGEKNPDYWDFLYFAFTISVAVQTSDVAVGT 183
            ++  +FT+HYA L+Y    D EPPL+F D +  PDYWDFLYF+FTI+VA QT+DV++ +
Sbjct: 133 LMVPMMFTVHYAHLYY--RTDGEPPLKFPDEQIAPDYWDFLYFSFTIAVASQTADVSIRS 190

Query: 184 RALRKTVLAHSVIGFLFNAAILGLSINIAASL 215
           RA+R+ VL  S++ F FN +IL LSINIAA L
Sbjct: 191 RAMRRAVLGQSLLSFFFNTSILALSINIAAGL 222


>DR0351 [S] COG4291 Predicted membrane protein Dra Deinococcus radiodurans
          Length = 227

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 93/183 (50%), Gaps = 2/183 (1%)

Query: 36  RLLTGWNAGVACYLLTIWVMMFRSRAADTRRLAEKEDESAQLVLATVCVAAIASLAAIVI 95
           R L GWN   A  LL +  ++  S   D  R A +ED++  L  A    A + SL  + +
Sbjct: 46  RALLGWNVFCAVNLLRLLPLLGFS-PEDVTRHATREDDTRALAAALTLAATLVSLVGVFV 104

Query: 96  ELADASHLESGQKLLHYAFTGGTVLGSWFLIGTVFTLHYARLFYAQDDDAEPPLRFADGE 155
            L  A+H    Q  L       TV  SW L+   +TLHYAR FY+         R  D  
Sbjct: 105 TLGQANHSHGLQAYLLTGLAVLTVALSWLLVQAEYTLHYARRFYSDGAGIRFIQRGTDDP 164

Query: 156 -KNPDYWDFLYFAFTISVAVQTSDVAVGTRALRKTVLAHSVIGFLFNAAILGLSINIAAS 214
             NPDY+DFLY + TI +  Q SD  + TR +R+ +LAH+ + + F+  I+ ++++  A 
Sbjct: 165 LPNPDYFDFLYLSLTIGMTYQVSDTNLDTREMRRLLLAHAALSYFFSVVIIAVTVSGVAG 224

Query: 215 LVG 217
           L+G
Sbjct: 225 LLG 227


>mlr0876 Non COG
          Length = 229

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 18/189 (9%)

Query: 40  GWNAGVACYLLTIWVMMFRSRAADTRRLAEKEDESAQLVLATVCVAAIA---SLAAIVIE 96
           G NA  A Y++ +   M +       + A   D+   ++ A   V  I    SL  ++ +
Sbjct: 47  GANAFFAAYVILVVSQMPKFTGKYLSKNARATDQPVLVIFAVTLVVVIVAVVSLFLLINQ 106

Query: 97  LADASHLESGQKLLHYAFTGGTVLGSWFLIGTVFTLHYARLFYAQDD--DAEPPLRFA-- 152
               + +E G  LL       ++   WF I  +  LHYA +++   D  DAE   +    
Sbjct: 107 KNRGNSVELGFALL-------SIPLGWFTIHAMAALHYAHVYWMDGDAVDAETKKKIPVG 159

Query: 153 ----DGEKNPDYWDFLYFAFTISVAVQTSDVAVGTRALRKTVLAHSVIGFLFNAAILGLS 208
                G+K P+ WDFLYF+  I +  QT+D  + T  +R  VL HS++ F FN  I+  +
Sbjct: 160 GLLFPGDKRPEGWDFLYFSAVIGMTAQTADTNISTTHMRCVVLVHSILSFFFNTVIVAAA 219

Query: 209 INIAASLVG 217
           +N+A SL G
Sbjct: 220 VNLAVSLGG 228


>BMEI1821 [S] COG4291 Predicted membrane protein Bme Brucella melitensis
          Length = 218

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 13/171 (7%)

Query: 40  GWNAGVACYLLTIWVMMFRSRAADTRRLAEKEDESAQLVLATVCVAAIASLAAIVIELAD 99
           G N     YLL    ++ R   +  ++ A   DE   ++      A +  +A++ I +  
Sbjct: 36  GANCFFVIYLLLAVSVLPRLTPSFLKKHAASADEPVWIIFLVTFAAVLIGIASLFILINS 95

Query: 100 ASHLESGQKLLHYAFTGGTVLGSWFLIGTVFTLHYARLFYAQ----DDDAEPPLRFA--- 152
           AS +++   ++    T  +V   WF I  +  +HYA +++       +D +   R+    
Sbjct: 96  ASKVDTFSLVV----TLASVPLGWFTIHMMTAIHYAHVYWQPREPAGNDPKQASRYRGGF 151

Query: 153 --DGEKNPDYWDFLYFAFTISVAVQTSDVAVGTRALRKTVLAHSVIGFLFN 201
              G   P  WDF Y+A+ I +  QTSD  V T A+R+T L HS++ F FN
Sbjct: 152 DFPGTPEPSGWDFAYYAYVIGMTAQTSDTNVTTPAMRRTTLLHSIVSFFFN 202


>SMc01272 [S] COG4291 Predicted membrane protein Sme Sinorhizobium meliloti
          Length = 219

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 72/140 (51%), Gaps = 11/140 (7%)

Query: 68  AEKEDESAQLVLATVCVAAIASLAAIVIELADASHLESGQKLLHYAFTGGTVLGSWFLIG 127
           A    E   ++     VAA  SL A+ + L  A     G   L  AF     LG W  I 
Sbjct: 66  ARDTGEPEPIIFLVTLVAAATSLVALFLALNRAG--GGGTVGLSIAF-AAVALG-WATIH 121

Query: 128 TVFTLHYARLFY--AQDDDAEPP----LRFADGEKNPDYWDFLYFAFTISVAVQTSDVAV 181
           T+  LHYA L++   ++D A  P    L F + + +P  +DFLYFAF I +  QTSDVA+
Sbjct: 122 TMAALHYAHLYWLAGRNDPASNPAARGLAFPETD-SPGGYDFLYFAFVIGMTAQTSDVAI 180

Query: 182 GTRALRKTVLAHSVIGFLFN 201
            T A+R+  L H+++ F FN
Sbjct: 181 TTTAMRRVNLMHAIVSFFFN 200