BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0052.p (222 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0550 [TK] COG0745 Response regulators consisting of a CheY-li... 191 1e-48 PA0756 [TK] COG0745 Response regulators consisting of a CheY-lik... 188 7e-48 STM2785 [TK] COG0745 Response regulators consisting of a CheY-li... 178 1e-44 AGc4479 [TK] COG0745 Response regulators consisting of a CheY-li... 175 7e-44 ygiX [TK] COG0745 Response regulators consisting of a CheY-like ... 172 7e-43 >RSc0550 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 232 Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 108/223 (48%), Positives = 151/223 (67%), Gaps = 4/223 (1%) Query: 1 MNVLLVEDDLVLADGLSRMLKSHGLSVNTVNNGTDADALLQRYTAT---VLVLDIGLPGL 57 M +L+ EDD LADGL+R L+ G +V+ +G ADA L TA +L+LD+GLP L Sbjct: 1 MRILIAEDDATLADGLTRSLRQAGYAVDRAADGAAADAALSAQTAQTYDLLILDVGLPRL 60 Query: 58 DGFEVVRRLRARGSNMPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIR 117 G EV++RLR+RG+ +PVL+LTA D++ +RV GL+LGADDY+ KPFA EL AR++AL+R Sbjct: 61 SGLEVLKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVR 120 Query: 118 RSSPQPTQLTIGG-LSLDTSSKRATIDGKKVDFSVREWTVLEYLMQQASRVVSKQQIIDA 176 R + L G L+ D + A I + VD S RE +LE L+ +A R+VSK+Q++D Sbjct: 121 RGTGGGATLVRHGPLAFDQVGRIAYIRDQMVDLSARELGLLEILLSRAGRLVSKEQLVDH 180 Query: 177 VLPWGEDVTLNAVEVYVSRIRTKTAGSGVAIRTIRGFGYMLEK 219 + WGE+V+ NA+EVYV R+R K G+ I T+RG GY LE+ Sbjct: 181 LCGWGEEVSNNAIEVYVHRLRKKIEVDGIRIATVRGLGYCLER 223 >PA0756 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 223 Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 100/219 (45%), Positives = 138/219 (63%), Gaps = 1/219 (0%) Query: 1 MNVLLVEDDLVLADGLSRMLKSHGLSVNTVNNGTDADALLQRYTATVLVLDIGLPGLDGF 60 M +LLVED LA+ + + LK G +V+ + +G AD L + +LD+GLP +DGF Sbjct: 1 MRILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEYALAILDVGLPRMDGF 60 Query: 61 EVVRRLRARGSNMPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSS 120 EV+ RLR RG +PVL+LTAR + DRVHGL LGADDYL KPF EL AR+KAL+RRS Sbjct: 61 EVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 121 PQPTQLT-IGGLSLDTSSKRATIDGKKVDFSVREWTVLEYLMQQASRVVSKQQIIDAVLP 179 QL G L D ++R ++D + + + RE VLE ++ + RV+SK+Q+ V Sbjct: 121 LGGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQVFG 180 Query: 180 WGEDVTLNAVEVYVSRIRTKTAGSGVAIRTIRGFGYMLE 218 E+ + +A+E+YV R+R K G V I T RG GY+LE Sbjct: 181 LDEEASADAIEIYVHRLRKKLEGGAVRIVTFRGLGYLLE 219 >STM2785 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sty Salmonella typhimurium LT2 Length = 224 Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 95/221 (42%), Positives = 138/221 (62%) Query: 1 MNVLLVEDDLVLADGLSRMLKSHGLSVNTVNNGTDADALLQRYTATVLVLDIGLPGLDGF 60 M +LL ED+ LA L + L +G +V+ V +G AD LL + VLDI +PG+DG Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL 60 Query: 61 EVVRRLRARGSNMPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSS 120 EVV+RLR RG +PVLLLTAR + DRV GL +GADDYL KPF EL AR++AL+RRS+ Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 Query: 121 PQPTQLTIGGLSLDTSSKRATIDGKKVDFSVREWTVLEYLMQQASRVVSKQQIIDAVLPW 180 Q ++ G + + G+ + + RE +L LM + +R VS+QQ+ + V Sbjct: 121 GQVHEVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFSL 180 Query: 181 GEDVTLNAVEVYVSRIRTKTAGSGVAIRTIRGFGYMLEKSE 221 ++V+ ++E+Y+ R+R K GS V I T+RG GY+LE+ + Sbjct: 181 NDEVSPESIELYIHRLRKKLQGSDVRITTLRGLGYVLERGD 221 >AGc4479 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 245 Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 149/220 (67%), Gaps = 1/220 (0%) Query: 1 MNVLLVEDDLVLADGLSRMLKSHGLSVNTVNNGTDADALLQRYTATVLVLDIGLPGLDGF 60 + +LLVED+ VL++GLS +L+ G +V+ V++G ADA + + +++LD+ LP +DG Sbjct: 20 LRILLVEDNQVLSEGLSALLRGSGYAVDVVSDGASADAAIAAESFDLVILDLNLPEMDGI 79 Query: 61 EVVRRLRARGSNMPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSS 120 EV+R +R+R VL+LTAR T ++V GL+LGADDY++KPF E AR++ L+RR++ Sbjct: 80 EVLRSMRSRQDKAAVLILTARGTPEEKVKGLDLGADDYMIKPFDITEFEARVRVLLRRNA 139 Query: 121 P-QPTQLTIGGLSLDTSSKRATIDGKKVDFSVREWTVLEYLMQQASRVVSKQQIIDAVLP 179 + + L+ G + D +S+ + DG+ +D RE +LE L +A +VV+K+ I+ ++ Sbjct: 140 GLRSSALSFGKVLFDLTSRTFSADGRPLDIPAREVALLEVLFMRAGKVVAKEAIVQSLTG 199 Query: 180 WGEDVTLNAVEVYVSRIRTKTAGSGVAIRTIRGFGYMLEK 219 + +D++ NA+E YVSR+R + A G+ ++T RG GY LEK Sbjct: 200 FDDDISANAIEQYVSRLRKRLAPHGLTVKTARGIGYYLEK 239 >ygiX [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 219 Score = 172 bits (435), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 91/218 (41%), Positives = 135/218 (61%), Gaps = 3/218 (1%) Query: 1 MNVLLVEDDLVLADGLSRMLKSHGLSVNTVNNGTDADALLQRYTATVLVLDIGLPGLDGF 60 M +LL+EDD+++ DG+ L G SV+ G L ++LD+ LPG+DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVVRRLRARGSNMPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSS 120 +++R R +G PVL+LTARD + +RV GL LGADDYL KPFA E+ AR++AL+RR++ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 PQPT-QLTIGGLSLDTSSKRATIDGKKVDFSVREWTVLEYLMQQASRVVSKQQIIDAVLP 179 Q + +L G + LD + AT+ G+ + +E+ +LE LM+ A RV+S++ I + + Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Query: 180 WGEDVTLNAVEVYVSRIRTKTAGSGVAIRTIRGFGYML 217 W E+VT NAVEV+V +R K IRT+ G GY L Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTL 216