BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0042.p         (69 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3391 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans...    82   3e-16
mlr7949 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans...    82   4e-16
RSc1198 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans...    63   1e-10

>RSc3391 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Rso Ralstonia
           solanacearum
          Length = 328

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 50/69 (72%)

Query: 1   MPADYYGGNKALYVQALKASLPMYSPDGKMPAEGPEVVLKVMAGFNPNIKGKKIDLSRTY 60
           MP ++      +Y+QAL A+LP +S DG+MPA+GP  VL+V++  NPN + K IDLSRTY
Sbjct: 258 MPPEFRRDRPDVYMQALIAALPTFSDDGRMPADGPATVLRVLSTSNPNARDKHIDLSRTY 317

Query: 61  TNEFVNQVK 69
           TN FV+Q K
Sbjct: 318 TNRFVDQAK 326


>mlr7949 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Mlo Mesorhizobium loti
          Length = 337

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 49/69 (71%)

Query: 1   MPADYYGGNKALYVQALKASLPMYSPDGKMPAEGPEVVLKVMAGFNPNIKGKKIDLSRTY 60
           MP DYY G+K  YV+AL A   M++PDG MP  GPE VL V++ F   ++GK+IDL++TY
Sbjct: 269 MPKDYYVGDKEGYVKALDAGKAMFTPDGIMPEGGPETVLTVLSAFKKELQGKQIDLAKTY 328

Query: 61  TNEFVNQVK 69
           T+EFV   K
Sbjct: 329 TSEFVKNAK 337


>RSc1198 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Rso Ralstonia
           solanacearum
          Length = 349

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 43/67 (64%)

Query: 1   MPADYYGGNKALYVQALKASLPMYSPDGKMPAEGPEVVLKVMAGFNPNIKGKKIDLSRTY 60
           +P  Y  G++ALY+ A +      SPDG MPA+GP   L+ ++ F+ ++KGK I L +T+
Sbjct: 277 VPESYLLGDRALYLAAWEKVREAISPDGVMPADGPATALRTLSEFDADVKGKPIKLDQTF 336

Query: 61  TNEFVNQ 67
           TN FV +
Sbjct: 337 TNAFVQK 343