BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0036.p         (144 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1513 [L] COG0328 Ribonuclease HI Rso Ralstonia solanacearum        210   8e-55
CC3365 [L] COG0328 Ribonuclease HI Ccr Caulobacter vibrioides         202   1e-52
PA1815 [L] COG0328 Ribonuclease HI Pae Pseudomonas aeruginosa         200   7e-52
NMA1817 [L] COG0328 Ribonuclease HI NmA Neisseria meningitidis Z...   192   2e-49
BMEI1457 [L] COG0328 Ribonuclease HI Bme Brucella melitensis          192   3e-49

>RSc1513 [L] COG0328 Ribonuclease HI Rso Ralstonia solanacearum
          Length = 151

 Score =  210 bits (534), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 99/141 (70%), Positives = 113/141 (80%)

Query: 1   LDRVEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTR 60
           +  V +Y+DGACKGNPG GGWG +L++GG EKEL GGE  TTNNRMEL AVIEA  AL R
Sbjct: 1   MQEVTVYSDGACKGNPGLGGWGTVLVSGGHEKELFGGEAVTTNNRMELMAVIEAFRALKR 60

Query: 61  RCDVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWV 120
            C V VYTDSQYVQKGISEW+ GWKARGWKTA ++PVKN DLW+ LD     H++ W WV
Sbjct: 61  PCRVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKNDDLWRTLDELVVTHEVSWHWV 120

Query: 121 KGHAGHPGNERADQLANRGVD 141
           KGHAGHPGNERAD LAN+GV+
Sbjct: 121 KGHAGHPGNERADALANKGVE 141


>CC3365 [L] COG0328 Ribonuclease HI Ccr Caulobacter vibrioides
          Length = 149

 Score =  202 bits (515), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 96/138 (69%), Positives = 111/138 (80%)

Query: 3   RVEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTRRC 62
           +V IY DGACKGNPG GGWGA+L  G ++KE+CGGE  TTNNRMEL A I+AL  L R C
Sbjct: 4   KVTIYTDGACKGNPGPGGWGAILFYGDKKKEICGGEPGTTNNRMELMAAIQALELLNRPC 63

Query: 63  DVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWVKG 122
            V ++TDSQYV KGI EWI GWKARGWKTA + PVKN DLW+ LDAA+A+H ++WRWVKG
Sbjct: 64  VVELHTDSQYVMKGIQEWIRGWKARGWKTADKSPVKNDDLWKRLDAARARHDVDWRWVKG 123

Query: 123 HAGHPGNERADQLANRGV 140
           HAGHP NERAD LAN G+
Sbjct: 124 HAGHPLNERADALANEGL 141


>PA1815 [L] COG0328 Ribonuclease HI Pae Pseudomonas aeruginosa
          Length = 148

 Score =  200 bits (509), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 93/139 (66%), Positives = 113/139 (81%)

Query: 2   DRVEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTRR 61
           ++V IY DGACKGNPG GGWGALL+  G E+EL GGE +TTNNRMEL A I+AL AL R 
Sbjct: 5   EQVVIYTDGACKGNPGRGGWGALLLYKGAERELWGGEPDTTNNRMELMAAIQALAALKRS 64

Query: 62  CDVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWVK 121
           C + + TDS+YV +GI+EW+  WK RGWKTA+++PVKN DLWQALD   A+H++EW+WV+
Sbjct: 65  CPIRLITDSEYVMRGITEWLPNWKKRGWKTASKQPVKNADLWQALDEQVARHQVEWQWVR 124

Query: 122 GHAGHPGNERADQLANRGV 140
           GH G PGNERADQLANRGV
Sbjct: 125 GHTGDPGNERADQLANRGV 143


>NMA1817 [L] COG0328 Ribonuclease HI NmA Neisseria meningitidis Z2491
          Length = 145

 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 103/136 (75%)

Query: 4   VEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTRRCD 63
           V +Y DGACKGNPG GGWG L+  G  EKEL GGE  TTNNRMEL AVIE L +L RRC 
Sbjct: 5   VYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLKRRCT 64

Query: 64  VTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWVKGH 123
           V + TDSQYV+ G+  WIHGWK  GWKTAA++PVKN DLW+ LDA   +H++ W WVKGH
Sbjct: 65  VIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDALVGRHQVSWTWVKGH 124

Query: 124 AGHPGNERADQLANRG 139
           AGH  NERAD LANRG
Sbjct: 125 AGHAENERADDLANRG 140


>BMEI1457 [L] COG0328 Ribonuclease HI Bme Brucella melitensis
          Length = 154

 Score =  192 bits (487), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 92/143 (64%), Positives = 106/143 (74%)

Query: 1   LDRVEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTR 60
           + R+E Y DGAC GNPG GGWGALL   G EKEL GGE  TTNNRMEL A I AL AL  
Sbjct: 1   MKRIEAYTDGACSGNPGPGGWGALLRWNGNEKELKGGEAETTNNRMELMAAISALSALKE 60

Query: 61  RCDVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWV 120
            C+V +YTDS YV+ GIS WI GWK  GWKTAA++PVKN +LWQALD A+  HK+ W W+
Sbjct: 61  PCEVDLYTDSVYVRDGISGWIEGWKRNGWKTAAKKPVKNAELWQALDEARKAHKVTWHWI 120

Query: 121 KGHAGHPGNERADQLANRGVDTV 143
           KGHAGHP NERAD+LA  G++  
Sbjct: 121 KGHAGHPENERADELARAGMEPF 143