BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0034.p         (129 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1515 [R] COG0491 Zn-dependent hydrolases, including glyoxylas...   154   4e-38
PA1813 [R] COG0491 Zn-dependent hydrolases, including glyoxylase...   138   3e-33
all0580 [R] COG0491 Zn-dependent hydrolases, including glyoxylas...   124   6e-29
VC2236 [R] COG0491 Zn-dependent hydrolases, including glyoxylase...   123   1e-28
YPO1079 [R] COG0491 Zn-dependent hydrolases, including glyoxylas...   117   5e-27

>RSc1515 [R] COG0491 Zn-dependent hydrolases, including glyoxylases Rso
           Ralstonia solanacearum
          Length = 284

 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/125 (62%), Positives = 90/125 (72%), Gaps = 5/125 (4%)

Query: 7   VPVYGPAGEAIPTITQPLWEDDLVHLAALGLGLKVIDVPGHTKGHIAYYAARQG-----W 61
           +PV GPA E+IP  TQ + E D V L+       V+DVPGHT+GH+AY    QG      
Sbjct: 93  LPVIGPADESIPCRTQAVREGDTVTLSHPAATFHVLDVPGHTRGHVAYVGRLQGPDAPAS 152

Query: 62  LFCGDTLFAGGCGRLFEGTPQQMVTSLNKLTALPADTQVYCAHEYTLSNLRFAREIEPGN 121
           LFCGDTLFA GCGRLFEGTP QM  SL+KL ALP DT+VYCAHEYT +N+RFAR +EPGN
Sbjct: 153 LFCGDTLFATGCGRLFEGTPAQMRLSLSKLAALPPDTRVYCAHEYTAANVRFARAVEPGN 212

Query: 122 AALIA 126
           AAL A
Sbjct: 213 AALAA 217


>PA1813 [R] COG0491 Zn-dependent hydrolases, including glyoxylases Pae
           Pseudomonas aeruginosa
          Length = 258

 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 83/121 (68%), Gaps = 3/121 (2%)

Query: 9   VYGPAGEAIPTITQPLWEDDLVHLAALGLGLKVIDVPGHTKGHIAYY-AARQGWLFCGDT 67
           V GPA E IP     L + + V +  LGL  ++  VPGHT GHIAYY  A    LFCGDT
Sbjct: 76  VLGPANEKIPARDLALEDGERVEV--LGLVFEIFHVPGHTLGHIAYYHPAETPLLFCGDT 133

Query: 68  LFAGGCGRLFEGTPQQMVTSLNKLTALPADTQVYCAHEYTLSNLRFAREIEPGNAALIAR 127
           LFA GCGRLFEGTP QM  SL +L ALPA+T+VYC HEYTLSNLRFA  +EP NAAL  R
Sbjct: 134 LFAAGCGRLFEGTPAQMHHSLARLAALPANTRVYCTHEYTLSNLRFALAVEPDNAALRER 193

Query: 128 I 128
            
Sbjct: 194 F 194


>all0580 [R] COG0491 Zn-dependent hydrolases, including glyoxylases Nos
           Nostoc sp. PCC 7120
          Length = 257

 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 71/130 (54%), Positives = 82/130 (63%), Gaps = 9/130 (6%)

Query: 6   QVPVYGPAGEA--IPTITQPLWEDDLVHLAALGLGLKVIDVPGHTKGHIAYYAARQ---- 59
           QV VYG A +   IP     L   D V  A      +VI VPGHT+ HIAYY   Q    
Sbjct: 72  QVKVYGGAKDQGRIPGQQVFLQPGDRVQFA--DRVAEVIFVPGHTRAHIAYYFPPQTDDT 129

Query: 60  -GWLFCGDTLFAGGCGRLFEGTPQQMVTSLNKLTALPADTQVYCAHEYTLSNLRFAREIE 118
            G LFCGDTLFAGGCGRLFEGTP QMV SL KL +LP +T+V+CAHEYTL NL+FA  ++
Sbjct: 130 PGELFCGDTLFAGGCGRLFEGTPAQMVESLTKLRSLPENTRVWCAHEYTLKNLQFALSVD 189

Query: 119 PGNAALIARI 128
             N  L  R+
Sbjct: 190 SKNTELQKRL 199


>VC2236 [R] COG0491 Zn-dependent hydrolases, including glyoxylases Vch
           Vibrio cholerae
          Length = 252

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/119 (52%), Positives = 79/119 (66%), Gaps = 4/119 (3%)

Query: 6   QVPVYGPAGEAIPTITQPLWEDDLVHLAALGLGLKVIDVPGHTKGHIAYYAARQGWLFCG 65
           ++ V GPA E IPT+T P+ + D + L        V+ +PGHT GHI Y     G LFCG
Sbjct: 72  EIHVVGPAQEPIPTLTHPVEDGDQIEL--FDERFMVLGLPGHTLGHIGYVG--DGKLFCG 127

Query: 66  DTLFAGGCGRLFEGTPQQMVTSLNKLTALPADTQVYCAHEYTLSNLRFAREIEPGNAAL 124
           D LF+ GCGR+FEGT +QM +SLNKL +LP +TQVY AHEYT +N+ FA  +EP N  L
Sbjct: 128 DVLFSAGCGRVFEGTMEQMFSSLNKLLSLPEETQVYSAHEYTAANVAFALAVEPENEQL 186


>YPO1079 [R] COG0491 Zn-dependent hydrolases, including glyoxylases Ype
           Yersinia pestis
          Length = 251

 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 77/115 (66%), Gaps = 4/115 (3%)

Query: 7   VPVYGPAGEAIPTITQPLWEDDLVHLAALGLGLKVIDVPGHTKGHIAYYAARQGWLFCGD 66
           +PVYGP   A    T  + + D + +A  G    +I VPGHT GHIAYY++   +LFCGD
Sbjct: 72  IPVYGPQETAKKGATVIVNDGDSLTIA--GQNYTIIAVPGHTLGHIAYYSS--PYLFCGD 127

Query: 67  TLFAGGCGRLFEGTPQQMVTSLNKLTALPADTQVYCAHEYTLSNLRFAREIEPGN 121
           TLF+ GCGRL EGTP+QM  S+ +L  LP +T + CAHEYTLSNL+FA  I P +
Sbjct: 128 TLFSAGCGRLLEGTPEQMYASIQRLAQLPDETLICCAHEYTLSNLKFAHAILPAD 182