BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0028.p (308 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1950 [G] COG0524 Sugar kinases, ribokinase family Pae Pseudomo... 303 3e-82 RSc1013 [G] COG0524 Sugar kinases, ribokinase family Rso Ralston... 266 6e-71 HI0505 [G] COG0524 Sugar kinases, ribokinase family Hin Haemophi... 246 5e-65 PM0152 [G] COG0524 Sugar kinases, ribokinase family Pmu Pasteure... 238 1e-62 VCA0131 [G] COG0524 Sugar kinases, ribokinase family Vch Vibrio ... 237 2e-62 >PA1950 [G] COG0524 Sugar kinases, ribokinase family Pae Pseudomonas aeruginosa Length = 308 Score = 303 bits (776), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 167/306 (54%), Positives = 210/306 (68%), Gaps = 11/306 (3%) Query: 2 IVIIGSINMDLVLRVPRMPLPGETITGGQFRTIPGGKGANQAVACARLSADDVKVAMVAC 61 ++++GS+NMDLV+R PR+P GET+ G F T+PGGKGANQAVA ARL A+ VAM+ C Sbjct: 5 VLVVGSLNMDLVVRAPRLPRGGETLAGQSFITVPGGKGANQAVAAARLGAE---VAMIGC 61 Query: 62 LGDDAFGAELRAALRKDGIDDSHVTTIPGTASGIASILVDDNGQNSIVLASGANAELSPA 121 LGDDA+G +L AL+ +GID V + G +SG+A I+VDD+ QN+IV+ +G N LSPA Sbjct: 62 LGDDAYGDQLYRALQAEGIDCQGVERVAGESSGVALIVVDDSSQNAIVIVAGGNGHLSPA 121 Query: 122 HIDAARDLIGQARIVVLQLESPLPTVIHAIKLAHALGKTVVLNPAPA-QALPTELLGQID 180 + L+ QA++VV QLESPL TV H ++ AHALGKTV+LNPAPA + +P E L +D Sbjct: 122 VLARHEHLLEQAQVVVCQLESPLETVGHVLRRAHALGKTVILNPAPATRDVPAEWLPLVD 181 Query: 181 YLVPNEIEAAMLAGMPAGDIRIENDSDEQIAAVIGKLRAAGSTNVLVTLGEKGVYAALES 240 YLVPNE E+ +L +P DS E +LR G+ V+VTLG +G E Sbjct: 182 YLVPNETESELLCRLPV-------DSLESAGRAAERLREMGAGRVIVTLGAQGALLVGEG 234 Query: 241 GSGHFDAQAVKAVDTTAAGDTFIGGFVAALAEGRSEAEAIALGQRAAAISVARVGAQTSI 300 HF VKA+DTTAAGDTF+GGF AALA G EA AI GQ AAAISV R+GAQTSI Sbjct: 235 RVEHFPVARVKALDTTAAGDTFVGGFAAALARGLDEAAAIRFGQAAAAISVTRLGAQTSI 294 Query: 301 PSRREV 306 PSR EV Sbjct: 295 PSREEV 300 >RSc1013 [G] COG0524 Sugar kinases, ribokinase family Rso Ralstonia solanacearum Length = 315 Score = 266 bits (679), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 151/308 (49%), Positives = 196/308 (63%), Gaps = 11/308 (3%) Query: 2 IVIIGSINMDLVLRVPRMPLPGETITGGQFRTIPGGKGANQAVACARLSADDVKVAMVAC 61 ++++GS+NMDLV+R P +P PG+T+ TIPGGKGANQAVA ARL + +VAM+ C Sbjct: 15 VLVVGSLNMDLVIRTPCLPRPGQTVAAPALETIPGGKGANQAVASARLGS---RVAMLGC 71 Query: 62 LGDDAFGAELRAALRKDGIDDSHVTTIPGTASGIASILVDDNGQNSIVLASGANAELSPA 121 +GDD G LR L ++G+D + VT G +GIA + V DNGQN+IV+ +GAN +L+PA Sbjct: 72 VGDDPHGMALREGLLREGVDTAMVTAHAGAPTGIACVTVADNGQNTIVIVAGANRQLTPA 131 Query: 122 HIDAARDLIGQARIVVLQLESPLPTVIHAIKLAHALGKTVVLNPAPAQA-LPTELLGQID 180 IDA R +A+++V QLESP V A+ L LGKTV+LNPAPA LPT L D Sbjct: 132 MIDAQRAAFERAKVIVCQLESPPDAVERALLLGQRLGKTVILNPAPAAGPLPTPWLAACD 191 Query: 181 YLVPNEIEAAMLAGMPAGDIRIENDSDEQIAAVIGKLRAAGSTNVLVTLGEKGVYAALES 240 YL+PNE EAA+L R+ DS E L A G+ +V+VTLG +GV + Sbjct: 192 YLIPNETEAALLTAR-----RV--DSPEAALNAAADLHAQGARHVIVTLGARGVAYVDAT 244 Query: 241 GSGHFDAQAVKAVDTTAAGDTFIGGFVAALAEGRSEAEAIALGQRAAAISVARVGAQTSI 300 A +A+DTTAAGDTF+G ALAEG + EAI G AAA+SV R+GAQ SI Sbjct: 245 TRLLMPAHPAQAIDTTAAGDTFVGALATALAEGAAPVEAIQFGLAAAAVSVTRLGAQPSI 304 Query: 301 PSRREVAD 308 P R E+A Sbjct: 305 PFRSELAS 312 >HI0505 [G] COG0524 Sugar kinases, ribokinase family Hin Haemophilus influenzae Length = 306 Score = 246 bits (628), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 141/304 (46%), Positives = 190/304 (62%), Gaps = 10/304 (3%) Query: 2 IVIIGSINMDLVLRVPRMPLPGETITGGQFRTIPGGKGANQAVACARLSADDVKVAMVAC 61 + ++GSIN D V+ VP PGET+TG ++ GGKGANQAVA ARL A KVA ++C Sbjct: 5 LTVLGSINADHVISVPYFTKPGETLTGQNYQIAYGGKGANQAVAAARLGA---KVAFISC 61 Query: 62 LGDDAFGAELRAALRKDGIDDSHVTTIPGTASGIASILVDDNGQNSIVLASGANAELSPA 121 +G D+ G ++ A ++GID +H+ T+ +G+A I V + +NSIVLASGAN+ LS Sbjct: 62 IGSDSIGKTMKNAFAQEGIDTTHINTVSQEMTGMAFIQVAKSSENSIVLASGANSHLSEM 121 Query: 122 HIDAARDLIGQARIVVLQLESPLPTVIHAIKLAHALGKTVVLNPAPAQALPTELLGQIDY 181 + + I Q+ +++QLE+PL V A ++A G VVLNPAPAQ L ELL ID Sbjct: 122 VVRQSEAQIAQSDCLLMQLETPLSGVELAAQIAKKNGVKVVLNPAPAQILSDELLSLIDI 181 Query: 182 LVPNEIEAAMLAGMPAGDIRIENDSDEQIAAVIGKLRAAGSTNVLVTLGEKGVYAALESG 241 + PNE EA +L G+ D S + A+V G V++TLG KGV+ + + Sbjct: 182 ITPNETEAEILTGVEVAD----EQSAVKAASV---FHDKGIETVMITLGAKGVFVSRKGK 234 Query: 242 SGHFDAQAVKAVDTTAAGDTFIGGFVAALAEGRSEAEAIALGQRAAAISVARVGAQTSIP 301 S V+A+DTTAAGDTF GGFV AL E +S EAI GQ AAAISV + GAQ+SIP Sbjct: 235 SRIIKGFCVQAIDTTAAGDTFNGGFVTALLEEKSFDEAIRFGQAAAAISVTKKGAQSSIP 294 Query: 302 SRRE 305 +R+E Sbjct: 295 TRQE 298 >PM0152 [G] COG0524 Sugar kinases, ribokinase family Pmu Pasteurella multocida Length = 306 Score = 238 bits (607), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 143/305 (46%), Positives = 188/305 (61%), Gaps = 11/305 (3%) Query: 2 IVIIGSINMDLVLRVPRMPLPGETITGGQFRTIPGGKGANQAVACARLSADDVKVAMVAC 61 + ++GS+N D V+ VP PGET+TG + GGKGANQAVA ARL A+ + +AC Sbjct: 4 LTVLGSVNADHVISVPHFAKPGETLTGNHYHIAYGGKGANQAVAAARLGAN---IDFIAC 60 Query: 62 LGDDAFGAELRAALRKDGIDDSHVTTIPGTASGIASILVDDNGQNSIVLASGANAELSPA 121 +GDDA G ++ A ++DGI+ V I +GIA I V+ +G+NSIV+A+GANA L+ Sbjct: 61 IGDDAIGQAMKKAFQQDGINTQAVVEIADQMTGIAMIQVNAHGENSIVIAAGANAYLTET 120 Query: 122 HIDAARDLIGQARIVVLQLESPLPTVIHAIKLAHALGKTVVLNPAPAQALPTELLGQIDY 181 ++ D I QA +++QLE+PL VI A KLA + VVLNPAPAQ LP ELL Q+D Sbjct: 121 VVEQFADKITQADTLLMQLETPLRAVIFAAKLAKSANTKVVLNPAPAQPLPDELLTQLDM 180 Query: 182 LVPNEIEAAMLAGMPAGDIRIENDSDEQIAAVIGKLRAAGSTNVLVTLGEKGVYAALESG 241 + PNE E +L G+ ++ S Q AA+ G VL+TLG KGVYA+ + Sbjct: 181 ITPNETETEILTGVKV----VDEHSAAQAAAL---FHQKGIETVLITLGSKGVYASQKGT 233 Query: 242 SGHFDA-QAVKAVDTTAAGDTFIGGFVAALAEGRSEAEAIALGQRAAAISVARVGAQTSI 300 G A V A DTTAAGDTF G + AL E + A+AI AAAISV R GAQ SI Sbjct: 234 PGKMVAGFRVDAKDTTAAGDTFNGALMTALLEDKPLADAIRFAHAAAAISVTRAGAQPSI 293 Query: 301 PSRRE 305 P+R+E Sbjct: 294 PTRQE 298 >VCA0131 [G] COG0524 Sugar kinases, ribokinase family Vch Vibrio cholerae Length = 306 Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 140/305 (45%), Positives = 186/305 (60%), Gaps = 10/305 (3%) Query: 2 IVIIGSINMDLVLRVPRMPLPGETITGGQFRTIPGGKGANQAVACARLSADDVKVAMVAC 61 +V++GS+N D VL+VP P PGET+ G ++ IPGGKGANQAVA AR+ AD V +AC Sbjct: 4 LVVLGSVNADHVLQVPSFPRPGETLHGRNYQVIPGGKGANQAVAAARMQAD---VGFIAC 60 Query: 62 LGDDAFGAELRAALRKDGIDDSHVTTIPGTASGIASILVDDNGQNSIVLASGANAELSPA 121 +GDD+FG +R + + DGI+ + V P +GIA I V D+G+NSI +++ ANA+L+ A Sbjct: 61 VGDDSFGINIRESFKLDGINTAGVKLQPNCPTGIAMIQVSDSGENSICISAEANAKLTAA 120 Query: 122 HIDAARDLIGQARIVVLQLESPLPTVIHAIKLAHALGKTVVLNPAPAQALPTELLGQIDY 181 I+ I AR +++QLE+PL ++ A + A V+LNPAPA+ LP ELL +D Sbjct: 121 AIEPDLAAIRDARYLLMQLETPLDGILKAAQEAKTAKTNVILNPAPARELPDELLKCVDL 180 Query: 182 LVPNEIEAAMLAGMPAGDIRIENDSDEQIAAVIGKLRAAGSTNVLVTLGEKGVYAALESG 241 + PNE EA +L G I + +DS Q AA L G V++TLG KGV+ + Sbjct: 181 ITPNETEAEVLTG-----ITVYDDSSAQQAA--DALHCKGIEIVIITLGSKGVWLSQNGR 233 Query: 242 SGHFDAQAVKAVDTTAAGDTFIGGFVAALAEGRSEAEAIALGQRAAAISVARVGAQTSIP 301 VKA DTTAAGDTF G V L + AI AAAISV R GAQTSIP Sbjct: 234 GQRIPGFVVKATDTTAAGDTFNGALVTGLLQEMPLESAIKFAHAAAAISVTRFGAQTSIP 293 Query: 302 SRREV 306 +R EV Sbjct: 294 TRAEV 298