BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0025.p (353 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1175 [R] COG4239 ABC-type uncharacterized transport system, p... 463 e-130 PA1808 [R] COG4239 ABC-type uncharacterized transport system, pe... 370 e-102 STM2218 [R] COG4239 ABC-type uncharacterized transport system, p... 362 e-100 VCA0589 [R] COG4239 ABC-type uncharacterized transport system, p... 354 2e-97 yejE [R] COG4239 ABC-type uncharacterized transport system, perm... 347 2e-95 >RSc1175 [R] COG4239 ABC-type uncharacterized transport system, permease component Rso Ralstonia solanacearum Length = 374 Score = 463 bits (1191), Expect = e-130, Method: Compositional matrix adjust. Identities = 235/336 (69%), Positives = 286/336 (85%) Query: 15 SISPGRRIWLRFRQNRNGYASLIIFLILFVISLGAELVSNDKPLVASYHGKILFPIAHDY 74 S SP +R W RF+Q+R GY SLI+F+ LFV+SL +E +SND+PLV YHG+ FPI Y Sbjct: 23 SPSPLKRAWRRFKQHRLGYWSLILFVALFVLSLLSEAISNDRPLVVKYHGQWYFPIVKTY 82 Query: 75 SEKTFGGDFESPADYLDPFIQEQFRKDGNWAIYPPNHYRFDTLNYFARQPNPAPPSSENW 134 E TF GDF +P DYLDP+I+++F GN+A+YPPN Y ++TLNYFA++PNPAPPS+ENW Sbjct: 83 PETTFDGDFTTPTDYLDPYIRDKFNAPGNFALYPPNPYSYETLNYFAKEPNPAPPSAENW 142 Query: 135 LGTDDRGRDVFARLLYGFRISILFGLALTVTGVVLGLLAGAVQGYFAGRTDLFMQRLLEI 194 LGTDDRGRDVFARLLYGFR+S+LFGLALT+ GV++G L GA+ G+F GR DL QRL+E+ Sbjct: 143 LGTDDRGRDVFARLLYGFRVSVLFGLALTLIGVLVGTLTGALMGFFGGRFDLVSQRLIEV 202 Query: 195 WGSMPELYLLIIFSSIFEPSIGLLLVLLSLFGWMGLSDYVRADFLRNRNLEYVQAGRALG 254 WGSMPELYLLIIF+SIFEPS+GLL+VLLSLFGWM LS YVRA+F RNR+L+YV++ RA+G Sbjct: 203 WGSMPELYLLIIFASIFEPSLGLLIVLLSLFGWMSLSAYVRAEFYRNRSLDYVKSARAMG 262 Query: 255 LSNMQIIWRHVLPNSLTPVVTFLPFRMSASILALTSLDFLGLGVPPSTPSLGELLAQGKN 314 LS+ QII RH+LPNSLTP++TFLPF MSA+IL LTSLDFLGLGVPPS PSLGELLAQGK Sbjct: 263 LSDGQIIRRHILPNSLTPIITFLPFNMSAAILTLTSLDFLGLGVPPSMPSLGELLAQGKA 322 Query: 315 NLDAWWIALSTFIVLTVTLLLLTNIGDALRNALDVR 350 NLDAWWI+LSTF+ L + L+LLT +GDALR+A D R Sbjct: 323 NLDAWWISLSTFVTLVLILVLLTFMGDALRDAFDTR 358 >PA1808 [R] COG4239 ABC-type uncharacterized transport system, permease component Pae Pseudomonas aeruginosa Length = 339 Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/332 (54%), Positives = 237/332 (71%) Query: 20 RRIWLRFRQNRNGYASLIIFLILFVISLGAELVSNDKPLVASYHGKILFPIAHDYSEKTF 79 +R W RF+ N+ G+ SL +FLILFV SLGAEL++NDKPLV Y G FP+ Y E TF Sbjct: 8 QRRWARFKSNKRGWWSLWLFLILFVGSLGAELIANDKPLVVHYDGGWYFPVFKRYPETTF 67 Query: 80 GGDFESPADYLDPFIQEQFRKDGNWAIYPPNHYRFDTLNYFARQPNPAPPSSENWLGTDD 139 GG+F A+Y P+I + + W ++PP Y +DT+NY + P PAPPS+ENWLGTDD Sbjct: 68 GGEFPLEANYKSPYISQLIAEKDGWVLWPPIPYSYDTINYELKVPAPAPPSAENWLGTDD 127 Query: 140 RGRDVFARLLYGFRISILFGLALTVTGVVLGLLAGAVQGYFAGRTDLFMQRLLEIWGSMP 199 + RDV AR++YGFR+SILF L LTV ++G+ GA+QGY+ G DL QR LE+W +P Sbjct: 128 QARDVLARVIYGFRVSILFALTLTVLSSLIGVTVGALQGYYGGWVDLLGQRFLEVWSGLP 187 Query: 200 ELYLLIIFSSIFEPSIGLLLVLLSLFGWMGLSDYVRADFLRNRNLEYVQAGRALGLSNMQ 259 LYLLII +S +P+ LL ++ LF WM L D VRA+FLR RNLEYV+A RALG+ N Sbjct: 188 VLYLLIILASFVQPNFWWLLGIMLLFSWMSLVDVVRAEFLRGRNLEYVRAARALGMRNSA 247 Query: 260 IIWRHVLPNSLTPVVTFLPFRMSASILALTSLDFLGLGVPPSTPSLGELLAQGKNNLDAW 319 I++RH+LPN++ +TF+PF ++ +I LTSLDFLG G+PP PSLGEL+AQGK+NL A Sbjct: 248 IMFRHILPNAMISTLTFMPFILTGAIGTLTSLDFLGFGLPPGAPSLGELVAQGKSNLQAP 307 Query: 320 WIALSTFIVLTVTLLLLTNIGDALRNALDVRR 351 W+ +S F+VL V L LL IG+A R+A D R+ Sbjct: 308 WLGISAFVVLAVMLSLLVFIGEAARDAFDPRK 339 >STM2218 [R] COG4239 ABC-type uncharacterized transport system, permease component Sty Salmonella typhimurium LT2 Length = 341 Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/336 (52%), Positives = 241/336 (71%), Gaps = 2/336 (0%) Query: 14 PSISPGRRI-WLRFRQNRNGYASLIIFLILFVISLGAELVSNDKPLVASYHGKILFPIAH 72 P +SP + W RFR NR GY SL IFL++F +SL AEL++NDKPL+ Y G+ FP+ Sbjct: 2 PRLSPVNQARWARFRHNRRGYWSLWIFLVVFSLSLCAELIANDKPLLVRYEGQWYFPLVK 61 Query: 73 DYSEKTFGGDFESPADYLDPFIQEQFRKDGNWAIYPPNHYRFDTLNYFARQPNPAPPSSE 132 +YSE+ FGG + ADY DP++Q Q G W ++ P + +T+N+ QP P+PPS++ Sbjct: 62 NYSERDFGGPLATTADYQDPWLQRQLENRG-WVLWAPVRFSANTINFATTQPFPSPPSAK 120 Query: 133 NWLGTDDRGRDVFARLLYGFRISILFGLALTVTGVVLGLLAGAVQGYFAGRTDLFMQRLL 192 NWLGTD G DVFAR+LYG RISILFGL LT+ V+G+LAGA+QGY+ G+ DL+ QRL+ Sbjct: 121 NWLGTDANGGDVFARILYGTRISILFGLMLTICSSVMGVLAGALQGYYGGKVDLWGQRLI 180 Query: 193 EIWGSMPELYLLIIFSSIFEPSIGLLLVLLSLFGWMGLSDYVRADFLRNRNLEYVQAGRA 252 E+W MP L+L+I+ SS+ +P+ LL + LFGWM L VRA+FLR RN +Y++A +A Sbjct: 181 EVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQA 240 Query: 253 LGLSNMQIIWRHVLPNSLTPVVTFLPFRMSASILALTSLDFLGLGVPPSTPSLGELLAQG 312 LG+S+ II RH+LPN++ +TFLPF + +SI LTSLDFLG G+P +PSLGELL QG Sbjct: 241 LGVSDRDIILRHMLPNAMVATLTFLPFILCSSITTLTSLDFLGFGLPLGSPSLGELLLQG 300 Query: 313 KNNLDAWWIALSTFIVLTVTLLLLTNIGDALRNALD 348 KNNL A W+ ++ F+ + + L LL IG+A+R+A D Sbjct: 301 KNNLQAPWLGIAAFLSVAILLSLLIFIGEAVRDAFD 336 >VCA0589 [R] COG4239 ABC-type uncharacterized transport system, permease component Vch Vibrio cholerae Length = 352 Score = 354 bits (909), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 178/348 (51%), Positives = 238/348 (68%), Gaps = 4/348 (1%) Query: 1 MSATTVTASSSPTPSISPGRRIWLRFRQNRNGYASLIIFLILFVISLGAELVSNDKPLVA 60 M T + P P ++ R W RF+ NR G+ SL IFL+LFV+SL AEL++NDKPL+ Sbjct: 1 MMGMTKASKRVPNP-LTEAR--WARFKANRRGFWSLWIFLLLFVVSLFAELIANDKPLLI 57 Query: 61 SYHGKILFPIAHDYSEKTFGGDFESPADYLDPFIQEQFRKDGNWAIYPPNHYRFDTLNYF 120 Y G PI YSE FGG+F++ ADY DP++ + G I+P + +DT+N+ Sbjct: 58 QYDGAWYMPIVQRYSETQFGGEFDTEADYTDPYVVSLIEEKGQ-IIWPLIRFHYDTINFD 116 Query: 121 ARQPNPAPPSSENWLGTDDRGRDVFARLLYGFRISILFGLALTVTGVVLGLLAGAVQGYF 180 P+ P S NWLGTDD+GRDV AR++YGFRIS+LFG LTV ++G+L GA QGY+ Sbjct: 117 ITGSVPSAPDSVNWLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYY 176 Query: 181 AGRTDLFMQRLLEIWGSMPELYLLIIFSSIFEPSIGLLLVLLSLFGWMGLSDYVRADFLR 240 G DLF QR +E+W MP L+LLII SS EP+ LL ++ LF WM L VRA+FLR Sbjct: 177 GGWLDLFGQRFIEVWSGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLR 236 Query: 241 NRNLEYVQAGRALGLSNMQIIWRHVLPNSLTPVVTFLPFRMSASILALTSLDFLGLGVPP 300 RN +YV+A +A+G+S+M+II RH+LPN++ +T +PF +S S+ LTSLDFLG G+P Sbjct: 237 CRNFDYVRAAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPA 296 Query: 301 STPSLGELLAQGKNNLDAWWIALSTFIVLTVTLLLLTNIGDALRNALD 348 +PSLGELLAQGK NL A W+ +S F+VL+V L LL IG+A+R+A D Sbjct: 297 GSPSLGELLAQGKANLQAPWLGISAFVVLSVMLTLLVFIGEAVRDAFD 344 >yejE [R] COG4239 ABC-type uncharacterized transport system, permease component Eco Escherichia coli K12 Length = 341 Score = 347 bits (890), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 167/326 (51%), Positives = 232/326 (71%), Gaps = 1/326 (0%) Query: 23 WLRFRQNRNGYASLIIFLILFVISLGAELVSNDKPLVASYHGKILFPIAHDYSEKTFGGD 82 W RFR NR GY SL IFL+LF +SL +EL++NDKPL+ Y G FP+ +YSE FGG Sbjct: 12 WARFRHNRRGYWSLWIFLVLFGLSLCSELIANDKPLLVRYDGSWYFPLLKNYSESDFGGP 71 Query: 83 FESPADYLDPFIQEQFRKDGNWAIYPPNHYRFDTLNYFARQPNPAPPSSENWLGTDDRGR 142 S ADY DP+++++ +G W ++ P + ++N+ +P P+PPS +NWLGTD G Sbjct: 72 LASQADYQDPWLKQRLENNG-WVLWAPIRFGATSINFATNKPFPSPPSRQNWLGTDANGG 130 Query: 143 DVFARLLYGFRISILFGLALTVTGVVLGLLAGAVQGYFAGRTDLFMQRLLEIWGSMPELY 202 DV AR+LYG RIS+LFGL LT+ V+G+LAGA+QGY+ G+ DL+ QR +E+W MP L+ Sbjct: 131 DVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLF 190 Query: 203 LLIIFSSIFEPSIGLLLVLLSLFGWMGLSDYVRADFLRNRNLEYVQAGRALGLSNMQIIW 262 L+I+ SS+ +P+ LL + LFGWM L VRA+FLR RN +Y++A +ALG+S+ II Sbjct: 191 LIILLSSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIIL 250 Query: 263 RHVLPNSLTPVVTFLPFRMSASILALTSLDFLGLGVPPSTPSLGELLAQGKNNLDAWWIA 322 RH+LPN++ +TFLPF + +SI LTSLDFLG G+P +PSLGELL QGKNNL A W+ Sbjct: 251 RHMLPNAMVATLTFLPFILCSSITTLTSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLG 310 Query: 323 LSTFIVLTVTLLLLTNIGDALRNALD 348 ++ F+ + + L LL IG+A+R+A D Sbjct: 311 ITAFLSVAILLSLLIFIGEAVRDAFD 336