BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0016.p (222 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0603 Non COG 147 2e-35 VC1753 [S] COG2995 Uncharacterized paraquat-inducible protein A ... 124 2e-28 Z2880 [S] COG2995 Uncharacterized paraquat-inducible protein A E... 78 1e-14 STM1848 [S] COG2995 Uncharacterized paraquat-inducible protein A... 78 2e-14 ZpqiA [S] COG2995 Uncharacterized paraquat-inducible protein A E... 77 3e-14 >RSc0603 Non COG Length = 292 Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/208 (41%), Positives = 124/208 (59%), Gaps = 15/208 (7%) Query: 5 PD-LIVCEECDAVHRRPVLAHAEVARCLRCGAELERDTGSHVARLLPLTVASLIMFVIAN 63 PD I CE CD +HR V+A E ARC RCG +L R+ ++ LLPL V LI++++AN Sbjct: 67 PDAWIACEHCDTLHRHEVIALDEEARCTRCGVKLYRNQTERLSVLLPLVVTGLIVYIVAN 126 Query: 64 SFPIVQIELQGLTSETTLFGAVMVLNGEGMSLVAMLVLSTTILFPLVQMLVLLYLLLPSA 123 +FPI +++ G + TTL+ AV L M A+LV TT LFPL+ ++VL LL+ A Sbjct: 127 AFPIAEMDGGGNRNATTLWNAVEALYNYDMPFAAVLVALTTGLFPLMYLVVLAPLLIARA 186 Query: 124 HVVNDADDMHGAHDGRR-PGVKLLLRLMQIVRPWGMVEVFLLGVLVALVKLSNMAAVVPG 182 GRR P L LR ++RPW M+E+F+LG +VAL+K+++M ++ Sbjct: 187 R-------------GRRHPSAALALRAAALIRPWAMIEIFMLGAVVALIKVAHMVSLEAD 233 Query: 183 VALWAFGALTILLTVVVSFNPRYLWRIL 210 LWAF LT+ +T+ +S + R WR L Sbjct: 234 TGLWAFAMLTVFMTIALSIDLRPFWREL 261 >VC1753 [S] COG2995 Uncharacterized paraquat-inducible protein A Vch Vibrio cholerae Length = 434 Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 118/206 (57%), Gaps = 6/206 (2%) Query: 4 RPDLIVCEECDAVHRRPVLAHAEVARCLRCGAELERDTGSHVARLLPLTVASLIMFVIAN 63 + LI C+EC + P+L+ A+ A+C RCG L + + LT++ LI+ V++ Sbjct: 7 KNHLIGCDECGLITNVPLLSQAQTAQCPRCGHTLTQTPQKPYQTAVALTISCLILLVLSL 66 Query: 64 SFPIVQIELQGLTSETTLFGAVMVLNGEGMSLVAMLVLSTTILFPLVQMLVLLYLLLPSA 123 +FP + +QG+T E TL A +L L+A+L+ +T ILFP + + +LL++ +A Sbjct: 67 TFPFMSFSVQGMTQEITLLNAAKMLGEFQNVLLAILLFTTVILFPALYITILLFVSFKAA 126 Query: 124 HVVNDADDMHGAHDGRRPGVKLLLRLMQIVRPWGMVEVFLLGVLVALVKLSNMAAVVPGV 183 + + + R KLL + + V+PW MV+VFL+GVLV+L+K++++A V G Sbjct: 127 Q--STQRQLSSSEIQR---AKLLCKTLLTVQPWLMVDVFLIGVLVSLIKIASLAEVAMGY 181 Query: 184 ALWAFGALTILLTVVVSFNPRY-LWR 208 + WAF +L+ VS RY LW+ Sbjct: 182 SFWAFCFFAMLVVKTVSLVDRYWLWQ 207 Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 110/223 (49%), Gaps = 21/223 (9%) Query: 2 HERPDLIVCEECDAVHR-RPVLAHAEVARCLRCGAELERDTGS-HVARLLPLTVASLIMF 59 H + + C C ++ RP + CLRCG+ L ++ L +A++I + Sbjct: 224 HCTHNSVSCHTCQQINLLRP---DQKKPTCLRCGSRLHAYHPQLNLQWAWALLLAAIIFY 280 Query: 60 VIANSFPIVQIELQGLTSETTLFGAVMVLNGEGMSLVAMLVLSTTILFPLVQMLVLLYLL 119 + AN +P++ G + +++ V++L G VAM++ +I P+ +M L +L Sbjct: 281 IPANLYPMMYTVSLGKSEGSSIMQGVILLWHLGSYPVAMVIFLASIFIPMAKMFALGWLY 340 Query: 120 LPSAHVVNDADDMHGAHDGRRPGVKLLLRLMQIVRPWGMVEVFLLGVLVALVKLSNMAAV 179 + + + + +R V R+ + + W M+++F++ +LV+LV+L N+ A+ Sbjct: 341 WQAGKL----NVFPEQQNLKRLKV---YRVTEFIGRWSMIDIFVVAILVSLVQLHNLMAI 393 Query: 180 VPGVALWAFGALTILLTVVVS--FNPRYLWRILVSERRNPEEP 220 PG A +F A+ +LLT++ + F+ R LW PE P Sbjct: 394 YPGPAALSFAAV-VLLTMLSAMVFDSRILW------HEPPESP 429 >Z2880 [S] COG2995 Uncharacterized paraquat-inducible protein A EcZ Escherichia coli O157:H7 EDL933 Length = 427 Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 25/220 (11%) Query: 4 RPDLIVCEECDAVHRRPVLAHAEVARCLRCGAELERDTGSHVARLLPLTVASLIMFVIAN 63 R D C +CD + P + + A C RC A++ + RL + L++ A Sbjct: 25 RGDYQRCPQCDMLFSLPEINSHQSAYCXRCQAKIRDGRDWSLTRLAAMAFTMLLLMPFAW 84 Query: 64 SFPIVQIELQGLTSETTLFGAVMVLNGEGMSLVAMLVLSTTILFPLVQMLVLLYLLLPSA 123 P++ I L G+ + + + + +G ++ +V I PL+ + + YL Sbjct: 85 GEPLLHIWLLGIRIDANVMQGIWQMTKQGDAITGSMVFFCVIGAPLILVTSIAYLWF--- 141 Query: 124 HVVNDADDMHGAHDGRRPGVKL--LLRLMQIVRPWGMVEVFLLGVLVALVKLSNMAAVVP 181 G R G+ L +L +++ ++ W M++++L+G+ VA +K+ + A + Sbjct: 142 --------------GNRLGMNLRPVLLMLERLKEWVMLDIYLVGIGVASIKVQDYAHIQA 187 Query: 182 GVALWAFGALTILLTVVVS-FNPRYLWRILVSERRNPEEP 220 GV L++F AL IL TV +S N LW ER P+ P Sbjct: 188 GVGLFSFVALVILTTVTLSHLNVEELW-----ERFYPQRP 222 Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 12/183 (6%) Query: 26 EVARCLRCGAELERDTGSHVARLLPLTVASLIMFVIANSFPIVQIELQGLTSETTLFGAV 85 + RC RC L + + +AS+++ + AN PI I L G E T+ + Sbjct: 244 QRGRCPRCHIPLRLRRRHSLQKCWAALLASIVLLLPANLLPISIIYLNGGRQEDTILSGI 303 Query: 86 MVLNGEGMSLVAMLVLSTTILFPLVQMLVLLYLLLPSAHVVNDADDMHGAHDGRRPGVKL 145 M L ++ VA +V +IL P +++V+ LLL S H G R + L Sbjct: 304 MSLASSNIA-VAGIVFIASILVPFTKVIVMFTLLL-SIHF--------KCQQGLRTRI-L 352 Query: 146 LLRLMQIVRPWGMVEVFLLGVLVALVKLSNMAAVVPGVALWAFGALTILLTVVVSF-NPR 204 LLR++ + W M+++F++ + ++L+ + A G A + FGA IL + V + + R Sbjct: 353 LLRMVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAAFYFGAAVILTILAVEWLDSR 412 Query: 205 YLW 207 LW Sbjct: 413 LLW 415 >STM1848 [S] COG2995 Uncharacterized paraquat-inducible protein A Sty Salmonella typhimurium LT2 Length = 427 Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 104/214 (48%), Gaps = 21/214 (9%) Query: 10 CEECDAVHRRPVLAHAEVARCLRCGAELERDTGSHVARLLPLTVASLIMFVIANSFPIVQ 69 C ECD + P ++ + A C RC A++ + RL + V L++ A S P++ Sbjct: 31 CPECDMLFSLPEMSAHQSAYCPRCQAKIRDGRDWSLTRLTAMAVTMLLLMPFAWSEPLLH 90 Query: 70 IELQGLTSETTLFGAVMVLNGEGMSLVAMLVLSTTILFPLVQMLVLLYLLLPSAHVVNDA 129 I L G+ + + + + +G L A +VL + PL+ + + YL S +N Sbjct: 91 IYLLGVRIDANVMHGIWQMTQQGDPLTAAMVLFCVVGAPLILVFSIAYLWFGSLLGMN-- 148 Query: 130 DDMHGAHDGRRPGVKLLLRLMQIVRPWGMVEVFLLGVLVALVKLSNMAAVVPGVALWAFG 189 RP +L +++ ++ W M++++L+G+ VA +K+ + A + PG+ L AF Sbjct: 149 ---------LRP----VLLMLEKLKEWVMLDIYLVGIGVASIKVQDYAFLQPGIGLLAFV 195 Query: 190 ALTIL-LTVVVSFNPRYLWRILVSERRNPEEPVR 222 +L +L + ++ N LW ER P+ P + Sbjct: 196 SLVVLSILTMIHLNVEQLW-----ERFYPQRPAQ 224 >ZpqiA [S] COG2995 Uncharacterized paraquat-inducible protein A EcZ Escherichia coli O157:H7 EDL933 Length = 417 Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 107/218 (49%), Gaps = 25/218 (11%) Query: 4 RPDLIVCEECDAVHRRPVLAHAEVARCLRCGAELERDTGSHVARLLPLTVASLIMFVIAN 63 R L C C A+ A+ C RCG + + + L L V S+++++ AN Sbjct: 218 RQGLRSCSCCTAI------LPADEPVCPRCGTKGYVRRRNSLQWTLALLVTSIMLYLPAN 271 Query: 64 SFPIVQIELQGLTSETTLFGAVMVLNGEGMSLVAMLVLSTTILFPLVQMLVLLYLLLPSA 123 PI+ +L G +T+ V++L EG VA ++ +I+ P ++M+ + +L Sbjct: 272 ILPIMVTDLLGSKMPSTILAGVILLWSEGSYPVAAVIFLASIMVPTLKMIAIAWLCW--- 328 Query: 124 HVVNDADDMHGAHDGRRPGVKLLLRLMQIVRPWGMVEVFLLGVLVALVKLSNMAAVVPGV 183 DA HG D R + L+ +++ V W M++VF++ VL ALV++ + ++ P + Sbjct: 329 ----DAKG-HGKRDSER--MHLIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMSIYPAM 381 Query: 184 ALWAFGALTILLTV--VVSFNPRYLWRILVSERRNPEE 219 F AL +++T+ ++F+PR W R PE Sbjct: 382 GALMF-ALVVIMTMFSAMTFDPRLSW------DRQPES 412 Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 17/222 (7%) Query: 2 HERPDLIVCEECDAVHRRPVLAHAEVARCLRCGAELERDTGSHVARLLPLTVASLIMFVI 61 H I+C +CD + P L H + A C RCG L + R +A+L M ++ Sbjct: 5 HHAAKHILCSQCDMLVALPRLEHGQKAACPRCGTTLTVAWDAPRQRPTAYALAALFMLLL 64 Query: 62 ANSFPIVQIELQGLTSETTLFGAVMVLNGEGMSLVAMLVLSTTILFPLVQMLVLLYLLLP 121 +N FP V + + G+TSE TL VL E + + L L P ++ +L L Sbjct: 65 SNLFPFVNMNVAGVTSEITLLEIPGVLFSEDYASLGTFFLLFVQLVPAFCLITILLL--- 121 Query: 122 SAHVVNDADDMHGAHDGRRPGVKLLLRLMQIVRPWGMVEVFLLGVLVALVKLSNMAAVVP 181 VN A+ + L R++ ++ WGM E+FL GVLV+ VKL ++ Sbjct: 122 ----VNRAELPVRLKEQ-------LARVLFQLKTWGMAEIFLAGVLVSFVKLMAYGSIGV 170 Query: 182 GVALWAFGALTIL-LTVVVSFNPRYLWRIL--VSERRNPEEP 220 G + + +L L + R+LW + + E R P +P Sbjct: 171 GSSFLPWCLFCVLQLRAFQCVDRRWLWDDIAPMPELRQPLKP 212