BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0030.p         (179 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2639 [O] COG0576 Molecular chaperone GrpE (heat shock protein...   186   2e-47
NMB0561 [O] COG0576 Molecular chaperone GrpE (heat shock protein...   151   6e-37
NMA0744 [O] COG0576 Molecular chaperone GrpE (heat shock protein...   151   6e-37
VC0854 [O] COG0576 Molecular chaperone GrpE (heat shock protein)...   120   2e-27
PM0334 [O] COG0576 Molecular chaperone GrpE (heat shock protein)...   119   5e-27

>RSc2639 [O] COG0576 Molecular chaperone GrpE (heat shock protein) Rso
           Ralstonia solanacearum
          Length = 214

 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/157 (61%), Positives = 120/157 (76%), Gaps = 4/157 (2%)

Query: 26  VEPG---LEEQLIAAEAKIAEMQDAFLRAKAEAENIRRRAQDDISRAHKFAIEGFAESLL 82
           +EP    L  QL AA+ K  +  + + RA AE ENIRRRAQDD++RAHKFAIEGFAE LL
Sbjct: 59  IEPDTAELRRQLEAADEKARQNYENWARAVAEGENIRRRAQDDVARAHKFAIEGFAEYLL 118

Query: 83  SVKDSLEMALKIETPSVESLKEGVDMTLKQLSAAFEKNKLLEISPEAGEKLDPMKHQAIS 142
            V DSL+ AL   +  V  L+EGV++TLKQL+AAFEK ++ E++P  GEK DP +HQAIS
Sbjct: 119 PVMDSLQAALADASGDVAKLREGVELTLKQLNAAFEKGRVTELNP-VGEKFDPHRHQAIS 177

Query: 143 AVPAEQEANTVVTVLQKGYTISERLLRPALVTVAQGK 179
            VPA+QEANTVV VLQ+GYT+++R+LRPALVTVA  K
Sbjct: 178 MVPADQEANTVVNVLQRGYTLADRVLRPALVTVAAPK 214


>NMB0561 [O] COG0576 Molecular chaperone GrpE (heat shock protein) Nme
           Neisseria meningitidis MC58
          Length = 192

 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 89/187 (47%), Positives = 124/187 (66%), Gaps = 16/187 (8%)

Query: 2   QDTEKPAEN-------EAVQDAQAQTQASEAVEPGLEEQLIAAEAKIAEMQ----DAFLR 50
           Q++E+  EN       E V +A    Q   A EP  E+     +A+IAE++    D  LR
Sbjct: 8   QNSEEAVENVEAVETVETVGNADG-VQEQAAAEPAYED----LQARIAELEAQLKDEQLR 62

Query: 51  AKAEAENIRRRAQDDISRAHKFAIEGFAESLLSVKDSLEMALKIETPSVESLKEGVDMTL 110
           A A  +N+RRR Q +I+  HKFA + FA  +L VKD LEMAL  ++ + ++LK GV MTL
Sbjct: 63  ALANEQNLRRRHQQEIADTHKFAGQKFAVEMLPVKDYLEMALLDQSGNFDALKMGVQMTL 122

Query: 111 KQLSAAFEKNKLLEISPEAGEKLDPMKHQAISAVPAEQEANTVVTVLQKGYTISERLLRP 170
            +L  AF+  ++ EI+P+AG+KLDP  HQA+ AV +EQE NTVV V++KGYT+S+R+LRP
Sbjct: 123 NELQKAFDATQIKEINPKAGDKLDPNIHQAMQAVASEQEPNTVVGVMKKGYTLSDRVLRP 182

Query: 171 ALVTVAQ 177
           A+VTVAQ
Sbjct: 183 AMVTVAQ 189


>NMA0744 [O] COG0576 Molecular chaperone GrpE (heat shock protein) NmA
           Neisseria meningitidis Z2491
          Length = 192

 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 89/187 (47%), Positives = 124/187 (66%), Gaps = 16/187 (8%)

Query: 2   QDTEKPAEN-------EAVQDAQAQTQASEAVEPGLEEQLIAAEAKIAEMQ----DAFLR 50
           Q++E+  EN       E V +A    Q   A EP  E+     +A+IAE++    D  LR
Sbjct: 8   QNSEEAVENVEAVETVETVGNADG-VQEQAAAEPAYED----LQARIAELEAQLKDEQLR 62

Query: 51  AKAEAENIRRRAQDDISRAHKFAIEGFAESLLSVKDSLEMALKIETPSVESLKEGVDMTL 110
           A A  +N+RRR Q +I+  HKFA + FA  +L VKD LEMAL  ++ + ++LK GV MTL
Sbjct: 63  ALANEQNLRRRHQQEIADTHKFAGQKFAVEMLPVKDYLEMALLDQSGNFDALKMGVQMTL 122

Query: 111 KQLSAAFEKNKLLEISPEAGEKLDPMKHQAISAVPAEQEANTVVTVLQKGYTISERLLRP 170
            +L  AF+  ++ EI+P+AG+KLDP  HQA+ AV +EQE NTVV V++KGYT+S+R+LRP
Sbjct: 123 NELQKAFDATQIKEINPKAGDKLDPNIHQAMQAVASEQEPNTVVGVMKKGYTLSDRVLRP 182

Query: 171 ALVTVAQ 177
           A+VTVAQ
Sbjct: 183 AMVTVAQ 189


>VC0854 [O] COG0576 Molecular chaperone GrpE (heat shock protein) Vch
           Vibrio cholerae
          Length = 200

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 100/152 (65%), Gaps = 5/152 (3%)

Query: 30  LEEQLIAAEAKIAEMQDAFLRAKAEAENIRRRAQDDISRAHKFAIEGFAESLLSVKDSLE 89
           LE  L+ +E ++ E QD+ LRA+AE EN+RRR++ ++ +A KFA+  FAE LL V D+LE
Sbjct: 50  LEAALLVSEERVKEQQDSVLRARAEVENMRRRSEQEVDKARKFALSRFAEELLPVIDNLE 109

Query: 90  MALKIETPSVESLK---EGVDMTLKQLSAAFEKNKLLEISPEAGEKLDPMKHQAISAV-P 145
            A++     VE++K   EGV++T K       K  L EI+P  GE  +P  HQA+S    
Sbjct: 110 RAIQAADGEVEAIKPLLEGVELTHKTFVDTIAKFGLKEINPH-GEVFNPEFHQAMSIQES 168

Query: 146 AEQEANTVVTVLQKGYTISERLLRPALVTVAQ 177
           AE E NTV+ V+QKGY ++ R+LRPA+V V++
Sbjct: 169 AEHEPNTVMFVMQKGYELNGRVLRPAMVMVSK 200


>PM0334 [O] COG0576 Molecular chaperone GrpE (heat shock protein) Pmu
           Pasteurella multocida
          Length = 201

 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 106/169 (62%), Gaps = 14/169 (8%)

Query: 20  TQASEAVEPGLEEQLIAA---EAKIAEM----QDAFLRAKAEAENIRRRAQDDISRAHKF 72
            +A   V+P LEE ++     EA++ EM    QD  LR++AE +NIRRRA+ D+ +AHKF
Sbjct: 34  VEAVNGVDP-LEEAILRVQELEAQLTEMVKKEQDFLLRSRAEMDNIRRRAEQDVEKAHKF 92

Query: 73  AIEGFAESLLSVKDSLEMAL----KIETPSVESLKEGVDMTLKQLSAAFEKNKLLEISPE 128
            +E F++ +L+  D+LE AL     +E  S++SL +GV++TLK+L A   +   +E    
Sbjct: 93  GLEKFSKDILNTIDNLERALATPANLEDESIKSLFDGVELTLKELLATVSRFG-VEAVGV 151

Query: 129 AGEKLDPMKHQAISAVPAEQ-EANTVVTVLQKGYTISERLLRPALVTVA 176
            GE  +P  HQAIS  P E  E N +  VLQKGY ++ R++RPA+V VA
Sbjct: 152 VGETFNPEVHQAISMQPMEGFETNQITVVLQKGYLLNGRVIRPAMVMVA 200