BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0012.p         (89 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1793 [E] COG1177 ABC-type spermidine/putrescine transport sys...    79   4e-15

>RSc1793 [E] COG1177 ABC-type spermidine/putrescine transport system,
          permease component II Rso Ralstonia solanacearum
          Length = 265

 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 47/68 (69%)

Query: 22 IVPVVLSVLAGVTDNFFVGLSSGFTLRWVAQVWDTYQMTIWRSIAIALACLAVTLVVGVP 81
          IVPV LS+  G+T N+  G  SG+T  WVAQVW+TY  +IW S+ +AL  LA+ L  GVP
Sbjct: 21 IVPVALSMAVGLTRNYIRGFKSGWTFDWVAQVWETYHASIWMSLLVALCTLAIVLAAGVP 80

Query: 82 LAYMLARR 89
            Y+LARR
Sbjct: 81 AGYVLARR 88