BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0159.p (408 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport... 489 e-138 AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport... 484 e-136 SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor... 478 e-134 BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transpo... 460 e-129 RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport... 130 4e-30 >RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 402 Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust. Identities = 229/399 (57%), Positives = 305/399 (76%), Gaps = 5/399 (1%) Query: 13 IAGVFACTTQGMAQTN---KISDGAVKIGVLTDMSSVYSESGGQGSIIAARMAVEDFGGK 69 +AG G+A + ++S VKIG +TD+S +Y++ GQG + A +MA+ED GGK Sbjct: 6 LAGALMAAGLGLAASGAHAQVSGDKVKIGYITDLSGLYADIDGQGGVEAVKMAIEDEGGK 65 Query: 70 VLGAPITVITADHQNKADIGASKAREWIDVEKVDMITDVITSSVALAVARVTNDKKRVNM 129 VLG PI ++TADHQNKADI ASKAREW+D + +DM+ S+ +LA+++V +KKRV + Sbjct: 66 VLGKPIELVTADHQNKADIAASKAREWMDQQGLDMLVGGTNSATSLAMSKVAAEKKRVFI 125 Query: 130 TVGAGTTRLTNEECSPYMVHYAYDTYALANGTAKTVTQQGGDTWFFMTADYVFGTSLEKD 189 +GAGT RLTNEEC+PY +HYAYDT ALA GT V +QGG +WFF+TADY FG SLE D Sbjct: 126 GIGAGTARLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLEND 185 Query: 190 ASDVVVANGGKVLGSVRHPLNASDFSSFLLQAQASKAKIIGLANAGNDMINTLKGAREFG 249 + VV ANGG V+GSV+HPL+ASDFSS+LLQAQASKA+I+GLANAG D IN++K A+EFG Sbjct: 186 TAAVVKANGGTVVGSVKHPLSASDFSSYLLQAQASKAQILGLANAGGDTINSIKAAKEFG 245 Query: 250 LAKGGQRFAGMLVNINDTHNMGLDVAQGMLLTEGFYWDRNEETRKFSRRYFAKMKQMPNM 309 + K + AG+L+ IND H++GL A+G+L+T+ +YWD N+ TRKF+ RYF+KMK+MP+ Sbjct: 246 ITK-TMKIAGLLMFINDVHSLGLQTAEGLLMTDSWYWDMNDATRKFATRYFSKMKKMPSS 304 Query: 310 IHAGVYSAVTNYLKAIEATGTDDADQVMAKLKSTKINDFYATNGVIREDGRMVHDMYLVE 369 + A YSAV+NY+KA+ A GTDD D+V+A+LK T++NDF+ + G IR DGR VHDMYL++ Sbjct: 305 LQAADYSAVSNYIKAVAAAGTDDPDKVIAQLKKTQLNDFF-SKGTIRADGRYVHDMYLMQ 363 Query: 370 VKTPAESKYPWDYYRIKRTIPAAEAFIPLSKSKCQFVKK 408 VKTPAESK PWDY +I TIP +AF ++SKC +KK Sbjct: 364 VKTPAESKKPWDYMKIVATIPGDQAFTTPAESKCPLLKK 402 >AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 402 Score = 484 bits (1245), Expect = e-136, Method: Compositional matrix adjust. Identities = 223/380 (58%), Positives = 285/380 (75%) Query: 29 KISDGAVKIGVLTDMSSVYSESGGQGSIIAARMAVEDFGGKVLGAPITVITADHQNKADI 88 +ISDG VKIG+L D S VY+ GG+ S AA+MAVEDFGGKVLGAP+ V+TADHQNKAD+ Sbjct: 23 EISDGKVKIGILNDQSGVYANFGGKYSYEAAKMAVEDFGGKVLGAPVEVVTADHQNKADV 82 Query: 89 GASKAREWIDVEKVDMITDVITSSVALAVARVTNDKKRVNMTVGAGTTRLTNEECSPYMV 148 ++ AR+W D E+VD I ++ +SSV LAV ++ DKK++ + GA TT LT ++CSPY Sbjct: 83 ASNIARQWYDTEQVDSIMELTSSSVGLAVQALSKDKKKITVNTGAATTELTGKQCSPYGF 142 Query: 149 HYAYDTYALANGTAKTVTQQGGDTWFFMTADYVFGTSLEKDASDVVVANGGKVLGSVRHP 208 H+AYDTY+LA GT + +QGGD+WFF+TADY FG SLE++ S+ V ANGGKVLGSVRHP Sbjct: 143 HWAYDTYSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTSNFVKANGGKVLGSVRHP 202 Query: 209 LNASDFSSFLLQAQASKAKIIGLANAGNDMINTLKGAREFGLAKGGQRFAGMLVNINDTH 268 L +D+SSFLLQAQ+S AK+IGLANAG D N +K A EFG+ GGQR A +L + + H Sbjct: 203 LATTDYSSFLLQAQSSGAKVIGLANAGLDTSNAIKQASEFGIVAGGQRLAALLFTLAEVH 262 Query: 269 NMGLDVAQGMLLTEGFYWDRNEETRKFSRRYFAKMKQMPNMIHAGVYSAVTNYLKAIEAT 328 +GL+ AQG+ LTEGFYWDR++E+RKF R+ + MPNMIH G YSAV +YLKAIE Sbjct: 263 GLGLEAAQGLTLTEGFYWDRDDESRKFGERFKERTGAMPNMIHTGTYSAVLHYLKAIEKA 322 Query: 329 GTDDADQVMAKLKSTKINDFYATNGVIREDGRMVHDMYLVEVKTPAESKYPWDYYRIKRT 388 GTDDAD V +K +ND +A +G + +GRM+HDMYL+EVK P ESK PWDYY++ T Sbjct: 323 GTDDADAVAKAMKEMPVNDVFAKDGHVAANGRMIHDMYLMEVKKPDESKQPWDYYKVLAT 382 Query: 389 IPAAEAFIPLSKSKCQFVKK 408 IP EAF+ +KS C VK+ Sbjct: 383 IPGKEAFMDPTKSGCPLVKQ 402 >SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 401 Score = 478 bits (1230), Expect = e-134, Method: Compositional matrix adjust. Identities = 221/400 (55%), Positives = 293/400 (73%), Gaps = 3/400 (0%) Query: 8 KLAACIAGVFACTTQGMAQTNKISDGAVKIGVLTDMSSVYSESGGQGSIIAARMAVEDFG 67 KL A +A V A +T +A SDG VKIG+L D S VY++ GG+ S AA MAVEDFG Sbjct: 4 KLIATLAMVLAGSTAALADA---SDGKVKIGILNDQSGVYADFGGKSSYEAALMAVEDFG 60 Query: 68 GKVLGAPITVITADHQNKADIGASKAREWIDVEKVDMITDVITSSVALAVARVTNDKKRV 127 GKVLG P+ V+TADHQNK DI ++ AR+W D E+VD I ++ TSSVALAV ++ +KK++ Sbjct: 61 GKVLGVPVEVVTADHQNKPDIASNIARQWYDTEQVDSIMELTTSSVALAVQAISKEKKKI 120 Query: 128 NMTVGAGTTRLTNEECSPYMVHYAYDTYALANGTAKTVTQQGGDTWFFMTADYVFGTSLE 187 ++ GA TT LT ++CSPY H+AYDT++LA GT + +QGGD+WFF+TADY FG SLE Sbjct: 121 DIVTGAATTELTGKQCSPYGFHWAYDTHSLAVGTGGALVKQGGDSWFFLTADYAFGYSLE 180 Query: 188 KDASDVVVANGGKVLGSVRHPLNASDFSSFLLQAQASKAKIIGLANAGNDMINTLKGARE 247 ++ + V NGG V+G+VRHPL +DFSSFLLQAQ+S AK+IGLANAG D N +K A E Sbjct: 181 ENTGNYVKENGGTVVGAVRHPLATTDFSSFLLQAQSSGAKVIGLANAGLDTSNAIKQAAE 240 Query: 248 FGLAKGGQRFAGMLVNINDTHNMGLDVAQGMLLTEGFYWDRNEETRKFSRRYFAKMKQMP 307 FG+ +GGQR A +L + + H +GLD AQG+ LTEGFYW+R+EE+ KF +R+ + +MP Sbjct: 241 FGIVQGGQRLAALLFTLAEVHGLGLDAAQGLTLTEGFYWNRDEESAKFGKRFMERTGKMP 300 Query: 308 NMIHAGVYSAVTNYLKAIEATGTDDADQVMAKLKSTKINDFYATNGVIREDGRMVHDMYL 367 NM+HAG YSAV YLKAIE GTD+ + V +L + ++D +A NG + +GRM+HDMYL Sbjct: 301 NMVHAGTYSAVLQYLKAIEKAGTDETEAVAKELHALPVDDVFAKNGTVAPNGRMIHDMYL 360 Query: 368 VEVKTPAESKYPWDYYRIKRTIPAAEAFIPLSKSKCQFVK 407 +EVK P ESK PWDY+++ TIP EAFI ++S C+ VK Sbjct: 361 LEVKKPDESKEPWDYFKVLATIPGKEAFIDPAQSGCELVK 400 >BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 401 Score = 460 bits (1184), Expect = e-129, Method: Compositional matrix adjust. Identities = 209/380 (55%), Positives = 280/380 (73%) Query: 29 KISDGAVKIGVLTDMSSVYSESGGQGSIIAARMAVEDFGGKVLGAPITVITADHQNKADI 88 +ISDG VKIG+L D S VY++ GG+ S AA+MA EDFGG VLGAPI +ITADHQNK D+ Sbjct: 22 EISDGKVKIGILNDQSGVYADFGGKWSYEAAKMAAEDFGGTVLGAPIEIITADHQNKPDV 81 Query: 89 GASKAREWIDVEKVDMITDVITSSVALAVARVTNDKKRVNMTVGAGTTRLTNEECSPYMV 148 ++ AR+W D E+VD I ++ TSSV LAV ++ +KK++ + GA T+ LT ++C+PY Sbjct: 82 ASNIARQWYDTEQVDSIMELTTSSVGLAVQALSKEKKKITINTGAATSELTGKQCTPYGF 141 Query: 149 HYAYDTYALANGTAKTVTQQGGDTWFFMTADYVFGTSLEKDASDVVVANGGKVLGSVRHP 208 H+AYDT+ALA GT ++ QQGGDTW+F+TADY FG SLE+ + V + GGKVLGSVRHP Sbjct: 142 HWAYDTHALAVGTGGSLVQQGGDTWYFLTADYAFGYSLEEQTTKFVESKGGKVLGSVRHP 201 Query: 209 LNASDFSSFLLQAQASKAKIIGLANAGNDMINTLKGAREFGLAKGGQRFAGMLVNINDTH 268 L+ +D+SSFLLQAQAS AK++GLANAG D N +K A EFG+ GGQR A +L + + H Sbjct: 202 LSTTDYSSFLLQAQASGAKVVGLANAGLDTSNAIKQAAEFGIVAGGQRLAALLFTLAEVH 261 Query: 269 NMGLDVAQGMLLTEGFYWDRNEETRKFSRRYFAKMKQMPNMIHAGVYSAVTNYLKAIEAT 328 +GL+ AQG+ LTEGFYWDR++E+R F +R+F + +MPNMI AG YSAV YLKAI+ Sbjct: 262 GLGLEAAQGLTLTEGFYWDRDDESRAFGKRFFDRTGRMPNMIQAGTYSAVLQYLKAIKEA 321 Query: 329 GTDDADQVMAKLKSTKINDFYATNGVIREDGRMVHDMYLVEVKTPAESKYPWDYYRIKRT 388 GTD+ + V KL + D +A +G + +GRM++DMYL+EVK P ESK PWDYY++ T Sbjct: 322 GTDETEAVAKKLHEMPVEDVFARHGKVGPNGRMIYDMYLMEVKKPEESKAPWDYYKVLAT 381 Query: 389 IPAAEAFIPLSKSKCQFVKK 408 IP +A++ +S C VK+ Sbjct: 382 IPGDQAYMKPEESGCPLVKQ 401 >RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 391 Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 137/259 (52%), Gaps = 5/259 (1%) Query: 32 DGAVKIGVLTDMSSVYSESGGQGSIIAARMAVEDFG--GKVLGAPITVITADHQNKADIG 89 + ++IG++ M+ VY+ + Q + AR+AV G +LG PI ++ D N G Sbjct: 37 EAPLRIGMVDPMTGVYA-AVAQNEVTGARLAVAQINARGGILGRPIELLVEDSANDVGTG 95 Query: 90 ASKAREWIDVEKVDMITDVITSSVALAVARVTNDKKRVNMTVGAGTTRLTNEECSPYMVH 149 KAR+ I+ ++V + + S +A A+A+V+N+KK +++ G T +T +C + Sbjct: 96 VQKARKLIERDQVSFLIGDVNSGIAQAIAQVSNEKKVLHIVSGGHTDTITGSDCKWNVYR 155 Query: 150 YAYDTYALANGTAKTVTQQGGDTWFFMTADYVFGTSLEKDASDVVVANGGKVLGSVRHPL 209 T AN A + + G W F+T DY FG +L+K A+ + GG + G+ PL Sbjct: 156 VCNTTSMEANAVANLLFSKYGKKWHFITPDYAFGHTLQKAAAADLQKLGGTITGNELTPL 215 Query: 210 NASDFSSFLLQAQASKAKIIGLANAGNDMINTLKGAREFGLAKGGQRFAGMLVNINDTHN 269 +DFS++L++A+A+ ++ + G+DM+N LK +FG+ K AG+ + Sbjct: 216 GTTDFSAYLIKARAANPDVLLVLPQGSDMVNCLKQIAQFGIGK-QMHIAGLQQELESLEA 274 Query: 270 MGLDVAQGMLLTEGFYWDR 288 M + G+ + E +YW + Sbjct: 275 MPPEARVGIWMFE-WYWKQ 292