BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0107.p (236 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 147 2e-35 RSc2243 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 142 9e-34 RSp0692 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 132 5e-31 RSp0887 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 130 2e-30 PA4902 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 120 2e-27 >RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 300 Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 120/235 (51%), Gaps = 1/235 (0%) Query: 1 LADILFSSVQKTLEQLEFTLGYQASFEPEKSERTFRICVTDVSQNVVVPGLMNALKVSGP 60 A+ L + L + +L + FEP S R F I +TD+ + +P LM L P Sbjct: 65 FAETLAEPIAYALGAIYNSLNATSRFEPATSTRAFTIAMTDIGEIYFLPTLMRRLARDAP 124 Query: 61 HLRLSLI-NASDQTSTLMKTGEVDMAIGFIPVLDSDFRQERLFDEDFVCIASASHPRIGK 119 + +S + N +D M+ G VD+AIGF+P L S F Q RLF + +VC+ HP + Sbjct: 125 GVTVSTVRNHADTLRDEMEAGRVDLAIGFLPDLKSGFFQRRLFRQRYVCLFRKGHPLAKR 184 Query: 120 SLTLAHFTNENHLIVTTSGTGHWIVSKTLDAKRITRKIALEVENFLGIGSIISQTDLIAT 179 +T+ F H+ + GTGH +V T+ + R+++L V +F+ +G I+ TDLIA Sbjct: 185 GMTMEGFLEAEHVSIVAEGTGHGMVDATILRAGLPRRVSLHVPHFIALGHILQSTDLIAV 244 Query: 180 VPRRFGESLAQTHPLKTYPSPVVLPPYSVKQYWHERFDNDLSNRWLRNAIAHLFA 234 VP+ + + L T PV +P ++ WH R + N+WLR + FA Sbjct: 245 VPQAYATRTLKPFGLDTAACPVKIPDITINVLWHARNHREPGNQWLRQLLFETFA 299 >RSc2243 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 326 Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 129/235 (54%), Gaps = 6/235 (2%) Query: 5 LFSSVQKTLEQLEFTLGYQASFEPEKSERTFRICVTDVSQNVVVPGLMNALKVSGPHLRL 64 L + + L +++ + +F+P + F I ++DV + V +P ++ A+ PH + Sbjct: 71 LIPAARDVLARIQQGIVETGAFDPATTTHLFSIALSDVGEMVFLPRIVEAMARQAPHASV 130 Query: 65 -SLINASDQTSTLMKTGEVDMAIGFIPVLD-SDFRQERLFDEDFVCIASASHP--RIGKS 120 S+ Q ++TG +D+A+G+ P L ++F Q+RLF F CI A HP R G + Sbjct: 131 QSVTLPPAQIERALETGALDLAVGYFPDLKKNNFFQQRLFTHYFTCIVRADHPVTRGGNT 190 Query: 121 -LTLAHFTNENHLIVTTSGTGHWIVSKTLDAKRITRKIALEVENFLGIGSIISQTDLIAT 179 L++ F H +V G + + L+ KRI RK AL +F+ I I+++TDLIAT Sbjct: 191 RLSMQQFLEYGHAVVRAEGRSQELYERFLERKRIRRKPALLTPHFMSIPFILARTDLIAT 250 Query: 180 VPRRFGESLAQTHP-LKTYPSPVVLPPYSVKQYWHERFDNDLSNRWLRNAIAHLF 233 VP G S Q+H ++ P+ LP + +KQ+WH +F ND ++WLR ++ LF Sbjct: 251 VPHAVGLSFMQSHANIRVMEPPLALPSFDLKQHWHRKFHNDARSQWLRALVSSLF 305 >RSp0692 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 321 Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 119/241 (49%), Gaps = 8/241 (3%) Query: 2 ADILFSSVQKTLEQLEFTLGYQASFEPEKSERTFRICVTDVSQNVVVPGLMNALKVSGPH 61 A+ L V L+ L+ G + FE S RTF I ++DV + +P L P Sbjct: 79 AEQLAEPVAMALDMLQRAFGQRTHFEAATSTRTFTIAMSDVGEVYFMPVLAQLCTEQAPG 138 Query: 62 LRLSLINASD-QTSTLMKTGEVDMAIGFIPVLDSD-FRQERLFDEDFVCIASASHP---- 115 +R+ + A M++G +D+AIG L + Q RLF +D+V + HP Sbjct: 139 VRIDTLRAGAFDMKVGMESGAIDLAIGAFDDLSGESVFQRRLFQQDYVTMFRRGHPLEPA 198 Query: 116 -RIGKSLTLAHFTNENHLIVTTSGTGHWIVSKTLDAKRITRKIALEVENFLGIGSIISQT 174 + G+ LTL F +HL+V +S + + + LD I++ V +F+ + I+S T Sbjct: 199 AQAGR-LTLERFRAASHLVVASSASPYNAIGPLLDKAGISQSARFSVPHFVAVPYIVSTT 257 Query: 175 DLIATVPRRFGESLAQTHPLKTYPSPVVLPPYSVKQYWHERFDNDLSNRWLRNAIAHLFA 234 DL+ TVPR+ E A L+ P P+ LP +WH RF D N+WLRN +A FA Sbjct: 258 DLVVTVPRKLAERAAPPFRLQFVPPPLKLPALQTNVFWHRRFHQDAGNQWLRNLVARHFA 317 Query: 235 E 235 E Sbjct: 318 E 318 >RSp0887 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 308 Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 10/229 (4%) Query: 9 VQKTLEQLEFTLGYQASFEPEKSERTFRICVTDVSQNVVVPGLMNALKVSGPHLRLSLIN 68 V++T+E+ F+ A R FR+ ++D+ + +P L L P + + ++ Sbjct: 88 VRRTIEKPTFSAAEDA--------RRFRVALSDIGERYFLPRLAAWLADHAPQVSIDTVS 139 Query: 69 AS-DQTSTLMKTGEVDMAIGFIPVLDSDFRQERLFDEDFVCIASASHPRIGKSLTLAHFT 127 AS ++ T + +GE+D+A+GF+P L ++RLF E FV IA HP I L + Sbjct: 140 ASREELLTGLASGEIDLAVGFLPGLGKQVHEKRLFQEKFVYIARRDHPGIDGRLQASQLR 199 Query: 128 NENHLIVTTSGTGHWI-VSKTLDAKRITRKIALEVENFLGIGSIISQTDLIATVPRRFGE 186 H++ + GT H V K L R+ +A+ V +FL IG I++ +DL+A VP Sbjct: 200 ALPHVVGSPHGTQHAAAVEKVLTGPRVRAVVAMRVGSFLSIGPIVADSDLVAVVPSNLAA 259 Query: 187 SLAQTHPLKTYPSPVVLPPYSVKQYWHERFDNDLSNRWLRNAIAHLFAE 235 +++ L+ PV P + V WH RF D WLR + LF E Sbjct: 260 LVSEHVGLQLIAPPVRFPSFEVSMVWHRRFHGDPGGAWLRGVFSQLFGE 308 >PA4902 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 298 Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 120/231 (51%), Gaps = 4/231 (1%) Query: 1 LADILFSSVQKTLEQLEFTLGYQASFEPEKSERTFRICVTDVSQNVVVPGLMNALKVSGP 60 +A+ L+ + +++L ++E + F+P +ER FRI +TD+ + + ++ L P Sbjct: 63 VAEQLYGTFRESLTRIEGAVQSVRHFDPATTERRFRIALTDLGEVGFLSLILERLTRDAP 122 Query: 61 HLRLSLINAS-DQTSTLMKTGEVDMAIGFIPVLDSDFRQERLFDEDFVCIASASHPRIGK 119 + ++ D+ + + +VD AI PV + R +R+ E +VC+ S HPRIG Sbjct: 123 FAEVEVLPLQVDEVGAWLSSAKVDAAICRQPVPGA--RSQRVLHERYVCLLSDRHPRIGD 180 Query: 120 SLTLAHFTNENHLIVTTSGTGHWIVSKTLDAKRITRKIALEVENFLGIGSIISQTDLIAT 179 SL+L + E H++VT + +GH I L+A ++ R+I+L V +F + II T+L+ Sbjct: 181 SLSLEQYLAERHIVVTRT-SGHGIAEDVLEAMQVQRRISLRVPHFSVLPKIIPGTELLTI 239 Query: 180 VPRRFGESLAQTHPLKTYPSPVVLPPYSVKQYWHERFDNDLSNRWLRNAIA 230 +P + ++ P LPP+ V +WHE + + W R IA Sbjct: 240 LPAQIAYRFVAEGGMRMLELPFTLPPFDVSLHWHESSERSAALNWFRTTIA 290