BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0087.p         (152 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1851 [K] COG1846 Transcriptional regulators Rso Ralstonia sol...    78   8e-15
Rv2011c [K] COG1846 Transcriptional regulators Mtu Mycobacterium...    70   3e-12
MT2066 [K] COG1846 Transcriptional regulators MtC Mycobacterium ...    70   3e-12
RSc1849 [K] COG1846 Transcriptional regulators Rso Ralstonia sol...    67   1e-11

>RSc1851 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 155

 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 69/132 (52%)

Query: 9   LTAVALTIFRLNGLLIEWGNDFCQPLGLTSARWQVLGAIALSSEPLSAPQIGTSMGITRQ 68
           L+ + L +FRLN  ++  G+     LGLTSARWQ+LG +     P     +   MG  RQ
Sbjct: 13  LSGLILDLFRLNSQVLTAGDRLVADLGLTSARWQILGTVNAVDRPQPVAWLARDMGANRQ 72

Query: 69  GIQKQINLLIDEGLILALPNPGNKRSPLYALTKQGQHSFSAIDDSWKQHVQKLSGEFTSS 128
            +Q+ +N L  EGL+    NP +KR+ L  +T++G+ ++ A        +  L+      
Sbjct: 73  NVQRIVNDLEKEGLVAFEANPHHKRAQLVVMTEKGKQAYGAAMQLQTPWINGLAKGLAVE 132

Query: 129 DLDATIQVLSAL 140
           D+    +V++AL
Sbjct: 133 DIKTMHKVIAAL 144


>Rv2011c [K] COG1846 Transcriptional regulators Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 143

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 6   ADKLTAVALTIFRLNGLLIEWGNDFCQPLGLTSARWQVLGAIALSSEPLSAPQIGTSMGI 65
           +D++  +   +F L GLL   G       G T ARWQ+L  +  S   L+ PQ    +G+
Sbjct: 2   SDEIARLVADVFELAGLLRRSGEVVAAREGHTQARWQLLSVV--SDRALTVPQAARRLGV 59

Query: 66  TRQGIQKQINLLIDEGLILALPNPGNKRSPLYALTKQGQHSFSAIDD 112
           TRQG+Q+  N L+  GL     NP ++ SPL  LT+ G+    AI +
Sbjct: 60  TRQGVQRVANDLVVCGLAELRHNPDHRTSPLLVLTENGRRVLQAITE 106


>MT2066 [K] COG1846 Transcriptional regulators MtC Mycobacterium
           tuberculosis CDC1551
          Length = 143

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 6   ADKLTAVALTIFRLNGLLIEWGNDFCQPLGLTSARWQVLGAIALSSEPLSAPQIGTSMGI 65
           +D++  +   +F L GLL   G       G T ARWQ+L  +  S   L+ PQ    +G+
Sbjct: 2   SDEIARLVADVFELAGLLRRSGEVVAAREGHTQARWQLLSVV--SDRALTVPQAARRLGV 59

Query: 66  TRQGIQKQINLLIDEGLILALPNPGNKRSPLYALTKQGQHSFSAIDD 112
           TRQG+Q+  N L+  GL     NP ++ SPL  LT+ G+    AI +
Sbjct: 60  TRQGVQRVANDLVVCGLAELRHNPDHRTSPLLVLTENGRRVLQAITE 106


>RSc1849 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 157

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 13  ALTIFRL-NGLLIEWGNDFCQPLGLTSARWQVLGAIALSSEPLSAPQIGTSMGITRQGIQ 71
           AL +F++ +G+L E G+     LGL+S+RWQVLG I  +  P     +   MG  RQ +Q
Sbjct: 17  ALYLFKVASGMLTE-GDRLVADLGLSSSRWQVLGTIVAAERPQPVAWLARDMGANRQNVQ 75

Query: 72  KQINLLIDEGLILALPNPGNKRSPLYALTKQGQHSFSAIDDSWKQHVQKLSGEFTSSDLD 131
           + ++ L  +G +    NP ++R+PL  LT  GQ+  +   +     + +L+      D++
Sbjct: 76  RIVHDLARDGFVEFANNPHHRRAPLVMLTASGQNVHNRAVNLGAPWMNELARGIPPEDIE 135

Query: 132 ATIQVLSAL 140
              +VL AL
Sbjct: 136 IMRRVLMAL 144