BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0080.p (304 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0065 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 245 1e-64 PA0159 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 229 8e-60 RSc2327 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 214 2e-55 RSp1146 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 195 1e-49 BMEII1135 [K] COG0583 Transcriptional regulator Bme Brucella mel... 192 6e-49 >RSc0065 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 312 Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 124/290 (42%), Positives = 188/290 (64%), Gaps = 1/290 (0%) Query: 3 MDRLHSMKVFAKVVEQGSFVRAAEIMSLSNAVVTRYIVDLENHLGTRLLNRSTRRLSLTE 62 MDRL SM+VF+KVVE GSF RAA+ +S+SNAVVTRY+ DLE HLGTRLLNR+TR LSLT+ Sbjct: 1 MDRLQSMRVFSKVVELGSFARAAQHLSMSNAVVTRYVADLEAHLGTRLLNRTTRSLSLTD 60 Query: 63 SGQAFLERVRHILPEIEEAEAIVAMATKKPGGTLSLYSHVGFGQGQLGKLLAEYSVAYPD 122 G+ +L+R + IL +I+EAE++ ++ G+L + + V FG L LLA + YP+ Sbjct: 61 VGETYLQRCQQILLDIDEAESLATSRSQALVGSLRIVAPVMFGLHVLPMLLARFQQLYPE 120 Query: 123 VVLDVSVSERTMDLVEEGMDIGFFSSLQKFDASMVVRKIGVAEVVLCASPSYLEKHGAPQ 182 V DV++S+R +D+VE+G D+G S + +V R++ AE+V+ A+P+YL +H PQ Sbjct: 121 VTFDVALSDRPIDIVEDGRDVGIMVSELGLGSHLVARRMISAEMVMAATPAYLRQHSTPQ 180 Query: 183 TPDELSRHACLNFSHEHLRHYWHVKTEAGIR-DIPITSQVVSNSALLLRDFALAGMGITM 241 ++++ H + H LRH W + G +P+ +V+++A L+ LA MGI + Sbjct: 181 RAEDIADHRVIAMWHPQLRHEWEMTAPDGQSIAVPVQPSLVTSNAELMHRAVLADMGIAI 240 Query: 242 RPSFSLGDDLRCGKLQRVLADFDMGQVSVMMAYPSRRLLSAKVRSFVDFI 291 S+ DL G+L RVL + + S+ + YPSR+ L KVR+F+D++ Sbjct: 241 LSSYMARPDLESGRLVRVLPQYKLPHRSLSLVYPSRKFLPTKVRTFIDYM 290 >PA0159 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 312 Score = 229 bits (583), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 178/295 (60%) Query: 3 MDRLHSMKVFAKVVEQGSFVRAAEIMSLSNAVVTRYIVDLENHLGTRLLNRSTRRLSLTE 62 MD L M+VFA+VV+ GSF AA+ + LS A V+R I DLE HL TRLL+R+TRRL+LTE Sbjct: 1 MDTLQGMRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHLQTRLLHRTTRRLALTE 60 Query: 63 SGQAFLERVRHILPEIEEAEAIVAMATKKPGGTLSLYSHVGFGQGQLGKLLAEYSVAYPD 122 +G+ +LER R IL +IE AEA A A +P G L + S +G GQ L ++A Y +PD Sbjct: 61 AGERYLERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGMGQHHLVPMIARYGALFPD 120 Query: 123 VVLDVSVSERTMDLVEEGMDIGFFSSLQKFDASMVVRKIGVAEVVLCASPSYLEKHGAPQ 182 VV+++++S+R D++EEG D+ Q D+ V +++G VLCASP YL++HG P+ Sbjct: 121 VVIELTLSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLGSIHSVLCASPGYLQQHGVPR 180 Query: 183 TPDELSRHACLNFSHEHLRHYWHVKTEAGIRDIPITSQVVSNSALLLRDFALAGMGITMR 242 + D+L RH CL W E G R + + + N A ++ A A +GI + Sbjct: 181 SVDDLERHVCLRLQDPAYPEGWIFADEQGERTVSPQNTFMVNVAEVMAQAAKADLGIALL 240 Query: 243 PSFSLGDDLRCGKLQRVLADFDMGQVSVMMAYPSRRLLSAKVRSFVDFISDRFPH 297 PS+ LR G+L RVL M Q ++ YPSRR L AK+R++VD + P Sbjct: 241 PSYVAAAALRNGELLRVLPGHAMHQRTIYALYPSRRYLDAKIRTWVDLLQQELPQ 295 >RSc2327 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 299 Score = 214 bits (545), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 111/293 (37%), Positives = 179/293 (61%), Gaps = 1/293 (0%) Query: 3 MDRLHSMKVFAKVVEQGSFVRAAEIMSLSNAVVTRYIVDLENHLGTRLLNRSTRRLSLTE 62 MDRL +M++F + VE GS AA + LS+ + R + LE LG +LLNR+TRR SLT+ Sbjct: 1 MDRLAAMQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGTLGVKLLNRTTRRQSLTD 60 Query: 63 SGQAFLERVRHILPEIEEAEAIVAMATKKPGGTLSLYSHVGFGQGQLGKLLAEYSVAYPD 122 G+ F ER ++IL E+E A+A + + P G L + + + FG L LAE+ +PD Sbjct: 61 GGRLFYERAKNILAELEAAQAQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPD 120 Query: 123 VVLDVSVSERTMDLVEEGMDIGFFSSLQKFDASMVVRKIGVAEVVLCASPSYLEKHGAPQ 182 + +++S++ RT+DLVEE D F + D+ ++ R++ ++LCASP YL+ G P+ Sbjct: 121 ITVELSLTNRTVDLVEEAFDAAFRTG-DLPDSGLMARRLAPHRLMLCASPGYLKMRGHPR 179 Query: 183 TPDELSRHACLNFSHEHLRHYWHVKTEAGIRDIPITSQVVSNSALLLRDFALAGMGITMR 242 TP++L +H CL F+H LR W + G IPI + +++S LR A+AG+GI ++ Sbjct: 180 TPEDLRKHECLVFAHTSLRTQWSFEGPDGSVKIPIKGKFLADSGEALRAAAVAGVGIILQ 239 Query: 243 PSFSLGDDLRCGKLQRVLADFDMGQVSVMMAYPSRRLLSAKVRSFVDFISDRF 295 P+ L +D++ G L R+L ++ S+ + Y R ++ K+R+F+DF+S F Sbjct: 240 PAELLAEDIQTGLLTRILKRYEPTPRSLHVLYAPDRRMTQKLRAFLDFVSHAF 292 >RSp1146 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 298 Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 114/300 (38%), Positives = 173/300 (57%), Gaps = 2/300 (0%) Query: 3 MDRLHSMKVFAKVVEQGSFVRAAEIMSLSNAVVTRYIVDLENHLGTRLLNRSTRRLSLTE 62 MDRL SM VF K VE GSF AAE++ +S+ +V +++ +E LG RLLNR+TRR SLT+ Sbjct: 1 MDRLTSMAVFVKAVELGSFSAAAEVLQMSSQLVGKHVQGIEQRLGVRLLNRTTRRQSLTD 60 Query: 63 SGQAFLERVRHILPEIEEAEAIVAMATKKPGGTLSLYSHVGFGQGQLGKLLAEYSVAYPD 122 G+AF ER + IL E+E AE++ P G L + + V FG L + L EY YP+ Sbjct: 61 FGRAFYERSKIILAEVEIAESLAEETRAVPTGKLRINAPVSFGMHTLAQRLPEYMKRYPE 120 Query: 123 VVLDVSVSERTMDLVEEGMDIGFFSSLQKFDASMVVRKIGVAEVVLCASPSYLEKHGAPQ 182 V +++++S RT+DL+ EG D F + D+ ++ R + +VLCA+P+YLE Sbjct: 121 VEVEMTLSNRTVDLINEGYD-AVFRVGELSDSGLIARPLAPYRLVLCAAPAYLEGRPPLT 179 Query: 183 TPDELSRHACLNFSHEHLRHYWHVKTEAGIRDIPITSQVVSNSALLLRDFALAGMGITMR 242 TP +L +H CL F++ LR W G +P++S+++ + L ALAGMG+ ++ Sbjct: 180 TPWDLRQHNCLGFAYTELRTNWTFDGPDGRVVVPVSSRLMVDHGEPLLCAALAGMGVLLQ 239 Query: 243 PSFSLGDDLRCGKLQRVLADFDMGQVSVMMAYPSRRLLSAKVRSFVDFISDRFPHPETDP 302 P + L G L VL ++ + + Y R ++ K+RSF+DF F PE+ P Sbjct: 240 PLELVRSALADGSLVGVLPQYEPLTRPMHVLYAPDRRVTPKLRSFLDFAVLAF-GPESAP 298 >BMEII1135 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 297 Score = 192 bits (489), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 171/299 (57%), Gaps = 4/299 (1%) Query: 3 MDRLHSMKVFAKVVEQGSFVRAAEIMSLSNAVVTRYIVDLENHLGTRLLNRSTRRLSLTE 62 MD L M+ F VVE F AA + S A++++Y+ +LE+ LG RLLNR+TR+ SLTE Sbjct: 1 MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTE 60 Query: 63 SGQAFLERVRHILPEIEEAEAIVAMATKKPGGTLSLYSHVGFGQGQLGKLLAEYSVAYPD 122 +G + R I+ EI+ + V+ + G + L + F +G+ L ++ +A+P+ Sbjct: 61 AGHTYYHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPE 120 Query: 123 VVLDVSVSERTMDLVEEGMDIGF-FSSLQKFDASMVVRKIGVAEVVLCASPSYLEKHGAP 181 +VLDV + +R +DLVEEG D+ + LQ D+S++ +++ VLC +P + + G P Sbjct: 121 IVLDVRLDDRFVDLVEEGFDLAIRITRLQ--DSSLIAKRLSPFHSVLCGAPELIARVGKP 178 Query: 182 QTPDELSRHACLNFSHEHLRHYWHVKTEAG-IRDIPITSQVVSNSALLLRDFALAGMGIT 240 Q P++L+ C+ ++ R+ WH + G + +P++ + NS + ++ ALAG+G Sbjct: 179 QRPEDLTDRPCIVDTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFC 238 Query: 241 MRPSFSLGDDLRCGKLQRVLADFDMGQVSVMMAYPSRRLLSAKVRSFVDFISDRFPHPE 299 M P+F D++ GKL L +F + + YP RR L AK+R+ VDF++ F E Sbjct: 239 MLPAFIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFMTQWFKERE 297