BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0067.p         (88 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1648 [TK] COG0745 Response regulators consisting of a CheY-li...   150   5e-37
PA5200 [TK] COG0745 Response regulators consisting of a CheY-lik...   127   6e-30
VC2714 [TK] COG0745 Response regulators consisting of a CheY-lik...   127   7e-30
YPO0136 [TK] COG0745 Response regulators consisting of a CheY-li...   122   2e-28
ompR [TK] COG0745 Response regulators consisting of a CheY-like ...   122   2e-28

>RSc1648 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Rso
           Ralstonia solanacearum
          Length = 240

 Score =  150 bits (380), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 73/85 (85%), Positives = 78/85 (91%)

Query: 1   LKKKGETVPLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKL 60
           LKK  E + LTTGEFSVLKVFAR+ RQPLSREKLMEMARGREYEVFDRSLDVQISRLRKL
Sbjct: 154 LKKNDEEITLTTGEFSVLKVFARHPRQPLSREKLMEMARGREYEVFDRSLDVQISRLRKL 213

Query: 61  IEPDPANPLYIQTVWGLGYVFIPEG 85
           IEPD +NP +IQTVWGLGYVFIP+G
Sbjct: 214 IEPDASNPRFIQTVWGLGYVFIPDG 238


>PA5200 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Pae
           Pseudomonas aeruginosa
          Length = 247

 Score =  127 bits (319), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 57/88 (64%), Positives = 73/88 (82%)

Query: 1   LKKKGETVPLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKL 60
           LKK  E   LTTGEF+VLK   ++AR+PL+R+KLM +ARGRE++  +RS+DVQISRLR+L
Sbjct: 158 LKKGDEVHMLTTGEFAVLKALVQHAREPLTRDKLMNLARGREWDALERSIDVQISRLRRL 217

Query: 61  IEPDPANPLYIQTVWGLGYVFIPEGKPR 88
           IEPDP+ P YIQTVWG+GYVF+P+G  R
Sbjct: 218 IEPDPSKPRYIQTVWGVGYVFVPDGNAR 245


>VC2714 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Vch Vibrio
           cholerae
          Length = 240

 Score =  127 bits (319), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 69/81 (85%)

Query: 6   ETVPLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDP 65
           E +PLT+GEF+VLK    NAR+PLSR+KLM MARGREY   +RS+DVQISRLR+++E DP
Sbjct: 157 EAMPLTSGEFAVLKALVTNAREPLSRDKLMNMARGREYSAMERSIDVQISRLRRMLEVDP 216

Query: 66  ANPLYIQTVWGLGYVFIPEGK 86
           + P YIQTVWGLGYVF+P+GK
Sbjct: 217 SKPRYIQTVWGLGYVFVPDGK 237


>YPO0136 [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Ype
           Yersinia pestis
          Length = 239

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 70/84 (83%)

Query: 3   KKGETVPLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIE 62
           ++ E +PLT+GEF+VLK    + R+PLSR+KLM +ARGREY   +RS+DVQISRLR+++E
Sbjct: 154 REDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVE 213

Query: 63  PDPANPLYIQTVWGLGYVFIPEGK 86
            DPA+P YIQTVWGLGYVF+P+G 
Sbjct: 214 EDPAHPRYIQTVWGLGYVFVPDGN 237


>ompR [TK] COG0745 Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain Eco
           Escherichia coli K12
          Length = 239

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 70/84 (83%)

Query: 3   KKGETVPLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIE 62
           ++ E +PLT+GEF+VLK    + R+PLSR+KLM +ARGREY   +RS+DVQISRLR+++E
Sbjct: 154 REDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVE 213

Query: 63  PDPANPLYIQTVWGLGYVFIPEGK 86
            DPA+P YIQTVWGLGYVF+P+G 
Sbjct: 214 EDPAHPRYIQTVWGLGYVFVPDGS 237