BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0040.p         (178 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1399 [J] COG0242 N-formylmethionyl-tRNA deformylase Rso Ralst...   254   6e-68
PA1122 [J] COG0242 N-formylmethionyl-tRNA deformylase Pae Pseudo...   153   2e-37
all2007 [J] COG0242 N-formylmethionyl-tRNA deformylase Nos Nosto...   121   9e-28
PA0019 [J] COG0242 N-formylmethionyl-tRNA deformylase Pae Pseudo...    93   3e-19
Cgl1563 [J] COG0242 N-formylmethionyl-tRNA deformylase Cgl Coryn...    93   4e-19

>RSc1399 [J] COG0242 N-formylmethionyl-tRNA deformylase Rso Ralstonia
           solanacearum
          Length = 177

 Score =  254 bits (649), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 121/176 (68%), Positives = 142/176 (80%)

Query: 3   IREILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLVIF 62
           IR ILKMGD RLLR A+PVQ+F TPE+  LI DMF+TM A  GAG    +    +Q+VIF
Sbjct: 2   IRPILKMGDSRLLRVAKPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIF 61

Query: 63  GFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEGMD 122
           GF +N RYPDAP VP+TVLINPT+ PLSD  E+GWEGCLSVPGLRGVVPR++RLRY G D
Sbjct: 62  GFDRNDRYPDAPAVPKTVLINPTIEPLSDAMEDGWEGCLSVPGLRGVVPRYTRLRYTGYD 121

Query: 123 EKGNRIDRTVDGFHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPELDPNDDD 178
           + G+ IDR  +GFHARVVQHECDHL G+LYPMR++DFTRFGFTEILFPEL  + +D
Sbjct: 122 QHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVQDFTRFGFTEILFPELPAHHND 177


>PA1122 [J] COG0242 N-formylmethionyl-tRNA deformylase Pae Pseudomonas
           aeruginosa
          Length = 147

 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 96/134 (71%), Gaps = 2/134 (1%)

Query: 3   IREILKMGDPRLLRQAEPV--QQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLV 60
           IREILKMGD RLLR A+PV  + FG+ E+  LI DMFETM  V G G    +    +QLV
Sbjct: 2   IREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLV 61

Query: 61  IFGFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEG 120
           IFGF++++RYPDAP VP T+L+NP +TPL DE EEGWEGCLSVPGLRG V R  R+RY+G
Sbjct: 62  IFGFERSERYPDAPAVPPTILLNPRVTPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQG 121

Query: 121 MDEKGNRIDRTVDG 134
           +D + +R      G
Sbjct: 122 LDPQDSRSTAASKG 135


>all2007 [J] COG0242 N-formylmethionyl-tRNA deformylase Nos Nostoc sp. PCC
           7120
          Length = 179

 Score =  121 bits (303), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 89/153 (58%)

Query: 6   ILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLVIFGFK 65
           I+++G+P L ++A  V+      +  LI D+  T+   NG G    +  ++ +L I   +
Sbjct: 8   IIQLGNPTLRQKAAWVENIHDATIQQLIDDLIATVAKANGVGIASPQVAQSYRLFIVASR 67

Query: 66  KNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEGMDEKG 125
            N RYP APE+  T +INP +   S E  EGWEGCLSVPG+RG+VPR   +  E  D  G
Sbjct: 68  PNPRYPHAPEMEPTAMINPKIVGHSTEIVEGWEGCLSVPGIRGLVPRHQAIEVEYTDRYG 127

Query: 126 NRIDRTVDGFHARVVQHECDHLIGVLYPMRIKD 158
           N   +T+  F AR+ QHE DHL GVL+  R++ 
Sbjct: 128 NLQKQTLTDFVARIFQHEFDHLDGVLFIDRVES 160


>PA0019 [J] COG0242 N-formylmethionyl-tRNA deformylase Pae Pseudomonas
           aeruginosa
          Length = 168

 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 8/152 (5%)

Query: 1   MAIREILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLV 60
           MAI  IL+  DPRL   A+PV+      +  LI DMFETM    G G    +     ++V
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDA-VRQLIDDMFETMYEAPGIGLAATQVNVHKRIV 59

Query: 61  IFGFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEG 120
           +    +++  P        V INP   PL+++ ++  EGCLSVPG    V R  ++R + 
Sbjct: 60  VMDLSEDKSEP-------RVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKA 112

Query: 121 MDEKGNRIDRTVDGFHARVVQHECDHLIGVLY 152
           +D  GN  +   +G  A  +QHECDHL G L+
Sbjct: 113 LDRDGNPFEEVAEGLLAVCIQHECDHLNGKLF 144


>Cgl1563 [J] COG0242 N-formylmethionyl-tRNA deformylase Cgl Corynebacterium
           glutamicum
          Length = 169

 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 82/158 (51%), Gaps = 11/158 (6%)

Query: 1   MAIREILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAG--ADMFETMRAVQ 58
           MA+RE+   GDP L+ +A+ V  F    + TLI DMF+TM    G G  A+    +R V 
Sbjct: 1   MAVREVRLFGDPVLVSRADEVVDF-DESLSTLIDDMFDTMEDAGGVGLAANQVGVLRRV- 58

Query: 59  LVIFGFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRY 118
              F F  + +           +INP   PL+++ + G EGCLS+P +     R+  +R 
Sbjct: 59  ---FVFDTSHQEGGL----RGHVINPVWEPLTEDTQTGKEGCLSIPDVSAETTRYETVRL 111

Query: 119 EGMDEKGNRIDRTVDGFHARVVQHECDHLIGVLYPMRI 156
            G D  GN +    +G  AR +QHE DHL GVL+  R+
Sbjct: 112 SGQDRDGNPVGFVANGLLARCIQHETDHLDGVLFLKRL 149