BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0028.p (249 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1404 [J] COG0052 Ribosomal protein S2 Rso Ralstonia solanacearum 426 e-119 NMB2101 [J] COG0052 Ribosomal protein S2 Nme Neisseria meningiti... 338 7e-93 NMA0328 [J] COG0052 Ribosomal protein S2 NmA Neisseria meningiti... 338 7e-93 PA3656 [J] COG0052 Ribosomal protein S2 Pae Pseudomonas aeruginosa 320 2e-87 XF2580 [J] COG0052 Ribosomal protein S2 Xfa Xylella fastidiosa 9a5c 291 1e-78 >RSc1404 [J] COG0052 Ribosomal protein S2 Rso Ralstonia solanacearum Length = 247 Score = 426 bits (1096), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/247 (81%), Positives = 225/247 (91%), Gaps = 1/247 (0%) Query: 1 MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEALKYVRQLS 60 MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHI+NLEKTL MY +ALKYVRQL+ Sbjct: 1 MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMYLDALKYVRQLA 60 Query: 61 SNRGTILFVGTKRQARDTIAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEASI 120 +NRGTILFVGTKRQ+R+ +A EA RAG+PYVD RWLGGMLTNFKT+K SIKRLKDMEA+ Sbjct: 61 ANRGTILFVGTKRQSREILAEEAARAGMPYVDSRWLGGMLTNFKTVKISIKRLKDMEAAK 120 Query: 121 ADGSNEKLSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI 180 G+ E +SKKEAL+F RE EKL+K+IGGIKDMGGIPDAIFV+DVGYHK A+TEAAKLGI Sbjct: 121 EAGALESMSKKEALMFEREMEKLEKSIGGIKDMGGIPDAIFVVDVGYHKIAVTEAAKLGI 180 Query: 181 PVIGVVDTNHSPEGVTYIIPGNDDSAKAIALYARGVADAILEGRENAVNEVVEAVKNGGD 240 PVIGVVDTNHSPEG+ Y+IPGNDDS+KA+ALY RGVADAILEGR NAV EVVEA + GGD Sbjct: 181 PVIGVVDTNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGRANAVQEVVEAAR-GGD 239 Query: 241 EFVEVNE 247 +FVEV E Sbjct: 240 DFVEVQE 246 >NMB2101 [J] COG0052 Ribosomal protein S2 Nme Neisseria meningitidis MC58 Length = 242 Score = 338 bits (867), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 155/231 (67%), Positives = 191/231 (82%) Query: 2 SVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEALKYVRQLSS 61 +TMR+M+EAGVHFGHQTRFWNPKMA +IFG RNKIHIVNLEKTL M+Q+A + VR+L + Sbjct: 3 QITMRQMIEAGVHFGHQTRFWNPKMAQYIFGARNKIHIVNLEKTLPMFQDAQEAVRRLVA 62 Query: 62 NRGTILFVGTKRQARDTIAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEASIA 121 N+GT+LFVGTKRQARD I EA RAG+P+VD RWLGGMLTN+KT+K SIKRL++ A++ Sbjct: 63 NKGTVLFVGTKRQARDIIREEATRAGMPFVDYRWLGGMLTNYKTVKQSIKRLEEKTAALE 122 Query: 122 DGSNEKLSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIP 181 + + SKKE L R+ EKL++++GGIK+M G+PDAIFVID GY KG + EA KLGIP Sbjct: 123 NAAESGFSKKEILEMQRDVEKLERSLGGIKNMKGLPDAIFVIDTGYQKGTLVEAEKLGIP 182 Query: 182 VIGVVDTNHSPEGVTYIIPGNDDSAKAIALYARGVADAILEGRENAVNEVV 232 VI VVDTN+SP+GV Y+IPGNDDSAKAI LY RG+ADA+LEG+ A+ E V Sbjct: 183 VIAVVDTNNSPDGVKYVIPGNDDSAKAIRLYCRGIADAVLEGKNQALQETV 233 >NMA0328 [J] COG0052 Ribosomal protein S2 NmA Neisseria meningitidis Z2491 Length = 242 Score = 338 bits (867), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 155/231 (67%), Positives = 191/231 (82%) Query: 2 SVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEALKYVRQLSS 61 +TMR+M+EAGVHFGHQTRFWNPKMA +IFG RNKIHIVNLEKTL M+Q+A + VR+L + Sbjct: 3 QITMRQMIEAGVHFGHQTRFWNPKMAQYIFGARNKIHIVNLEKTLPMFQDAQEAVRRLVA 62 Query: 62 NRGTILFVGTKRQARDTIAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEASIA 121 N+GT+LFVGTKRQARD I EA RAG+P+VD RWLGGMLTN+KT+K SIKRL++ A++ Sbjct: 63 NKGTVLFVGTKRQARDIIREEATRAGMPFVDYRWLGGMLTNYKTVKQSIKRLEEKTAALE 122 Query: 122 DGSNEKLSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIP 181 + + SKKE L R+ EKL++++GGIK+M G+PDAIFVID GY KG + EA KLGIP Sbjct: 123 NAAESGFSKKEILEMQRDVEKLERSLGGIKNMKGLPDAIFVIDTGYQKGTLVEAEKLGIP 182 Query: 182 VIGVVDTNHSPEGVTYIIPGNDDSAKAIALYARGVADAILEGRENAVNEVV 232 VI VVDTN+SP+GV Y+IPGNDDSAKAI LY RG+ADA+LEG+ A+ E V Sbjct: 183 VIAVVDTNNSPDGVKYVIPGNDDSAKAIRLYCRGIADAVLEGKNQALQETV 233 >PA3656 [J] COG0052 Ribosomal protein S2 Pae Pseudomonas aeruginosa Length = 246 Score = 320 bits (820), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 150/242 (61%), Positives = 189/242 (78%), Gaps = 8/242 (3%) Query: 3 VTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEALKYVRQLSSN 62 V MR+ML+AGVHFGHQTR+WNPKM FIFG RNKIHI+NLEKTL M+ EAL +V +L++ Sbjct: 4 VNMRDMLKAGVHFGHQTRYWNPKMGKFIFGARNKIHIINLEKTLPMFNEALTFVERLAAG 63 Query: 63 RGTILFVGTKRQARDTIAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEASIAD 122 + ILFVGTKR A + EA R G+PYVD RWLGGMLTN+KTI+ SIKRL+D+E D Sbjct: 64 KNKILFVGTKRSAGKIVREEAARCGMPYVDHRWLGGMLTNYKTIRQSIKRLRDLETQSQD 123 Query: 123 GSNEKLSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPV 182 G+ +KL+KKEAL+ SR+ EKL++++GGIKDMGG+PDA+FVIDV + + AITEA KLGIPV Sbjct: 124 GTFDKLTKKEALMRSRDLEKLERSLGGIKDMGGLPDALFVIDVDHERIAITEANKLGIPV 183 Query: 183 IGVVDTNHSPEGVTYIIPGNDDSAKAIALYARGVADAILEGRENAVNEVVEAVKNGGDEF 242 IGVVDTN SPEGV Y+IPGNDD+ +A+ LY +A+A++ G++ A DEF Sbjct: 184 IGVVDTNSSPEGVDYVIPGNDDAIRAVQLYLNSMAEAVIRGKQGAATS--------ADEF 235 Query: 243 VE 244 VE Sbjct: 236 VE 237 >XF2580 [J] COG0052 Ribosomal protein S2 Xfa Xylella fastidiosa 9a5c Length = 266 Score = 291 bits (744), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 135/227 (59%), Positives = 172/227 (75%) Query: 3 VTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEALKYVRQLSSN 62 VTMR+MLEAGVHFGHQTR+ +PKM+P IFG R KIHI+NLEKT+ ++ +A+ ++ ++ Sbjct: 4 VTMRQMLEAGVHFGHQTRYRHPKMSPNIFGARGKIHIINLEKTVPLFNDAMNFLSAVAQK 63 Query: 63 RGTILFVGTKRQARDTIAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEASIAD 122 RG++LFVGTKR ARD I EA+R G+PY+ QRWLGG LTNF+T+K S+ RLK++E + D Sbjct: 64 RGSVLFVGTKRSARDAIKEEAERCGMPYMIQRWLGGTLTNFRTVKQSVARLKELELAETD 123 Query: 123 GSNEKLSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPV 182 G+ KL K E L RE KLQ ++GGIKDM IPDAIFVID+G+ AI EA KLGIPV Sbjct: 124 GTFSKLVKHEVLRLRRESGKLQASLGGIKDMNRIPDAIFVIDIGHEDIAIKEAKKLGIPV 183 Query: 183 IGVVDTNHSPEGVTYIIPGNDDSAKAIALYARGVADAILEGRENAVN 229 + VVDTN+ P V Y IPGNDD+ +A+ LYAR ADA+LEG+ N Sbjct: 184 VAVVDTNYDPSLVDYPIPGNDDAIRAVQLYARAAADAVLEGKAAMPN 230