BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0027.p (294 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1405 [J] COG0264 Translation elongation factor Ts Rso Ralston... 444 e-124 NMB2102 [J] COG0264 Translation elongation factor Ts Nme Neisser... 263 5e-70 NMA0327 [J] COG0264 Translation elongation factor Ts NmA Neisser... 263 5e-70 PM1985 [J] COG0264 Translation elongation factor Ts Pmu Pasteure... 233 6e-61 lin1766 [J] COG0264 Translation elongation factor Ts Lin Listeri... 231 2e-60 >RSc1405 [J] COG0264 Translation elongation factor Ts Rso Ralstonia solanacearum Length = 294 Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust. Identities = 217/279 (77%), Positives = 251/279 (89%), Gaps = 2/279 (0%) Query: 1 MAAITAALVGELRAKTDAPMMECKKALTEAEGDMVRAEEILRVKLGSKASKASSRITSEG 60 MAAITA++V ELRAKTDAPMMECKKALTEAEG+M +AEEILRVKLG+KA KA++RIT+EG Sbjct: 3 MAAITASMVAELRAKTDAPMMECKKALTEAEGNMEKAEEILRVKLGNKAGKAAARITAEG 62 Query: 61 VVATYIAGGIGALVEINCETDFVTKNDEFIALANAVAKVIAEKNPADLAALAALPLGDKT 120 V+A++I G IGALVE+NCETDFV++ND+F+ AN +AK+IA +NPAD+AAL+AL +GD+T Sbjct: 63 VIASFIDGTIGALVELNCETDFVSRNDDFLGFANEIAKLIATQNPADVAALSALSIGDET 122 Query: 121 VEETRTELIGRIGENMSIRRFQRFETTGKLVSYLHGTRIGVVVEFDGADEQVGKDVAMHI 180 VE RT LIG+IGENM+IRRFQRFE T KL SYLHGTRIGV+V FDG DE KDVAMH Sbjct: 123 VEAVRTRLIGKIGENMTIRRFQRFEGT-KLASYLHGTRIGVMVAFDG-DEVAAKDVAMHA 180 Query: 181 AAMKPVALSSDQVPADLIEKERSVASLKAAESGKPADIVAKMVDGSVQKYLKEVSLFNQS 240 AAMKPVALSSD+VPA+LI KERS+A KAAESGKPA+IVAKMV+GSVQKYLKEVSL NQ Sbjct: 181 AAMKPVALSSDEVPAELIAKERSIAEQKAAESGKPAEIVAKMVEGSVQKYLKEVSLLNQP 240 Query: 241 FVKNDKQTVEQMLKAANTSVKSFSMFVVGEGIEKKQDDF 279 FVKNDKQTVEQMLKAANT+VK F++FVVGEGIEKKQDDF Sbjct: 241 FVKNDKQTVEQMLKAANTTVKGFTLFVVGEGIEKKQDDF 279 >NMB2102 [J] COG0264 Translation elongation factor Ts Nme Neisseria meningitidis MC58 Length = 284 Score = 263 bits (671), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 142/277 (51%), Positives = 186/277 (67%), Gaps = 9/277 (3%) Query: 1 MAAITAALVGELRAKTDAPMMECKKALTEAEGDMVRAEEILRVKLGSKASKASSRITSEG 60 MA ITA +V +LRA T MMECKKAL EAEG+ +AEEILR+K G+KA K + R +EG Sbjct: 1 MAEITAKMVADLRAATGLGMMECKKALVEAEGNFDKAEEILRIKSGAKAGKLAGRTAAEG 60 Query: 61 VVATYIAGGIGALVEINCETDFVTKNDEFIALANAVAKVIAEKNPADLAALAALPLGDKT 120 V+A I G +GALVE+NCETDFV K+ F+ AN VAK AEK PA + L+ L Sbjct: 61 VLAYAINGNVGALVEVNCETDFVAKDAGFVEFANFVAKTAAEKKPASVEELSEL------ 114 Query: 121 VEETRTELIGRIGENMSIRRFQRFETTGKLVSYLHGTRI--GVVVEFDGADEQVGKDVAM 178 VE R +I ++GENMS+RRFQ +T +LV+Y+HG GV+VE+ G+ E V + + M Sbjct: 115 VEAERKAIIAKLGENMSVRRFQVIDTANQLVAYIHGALATEGVLVEYKGS-EDVARKIGM 173 Query: 179 HIAAMKPVALSSDQVPADLIEKERSVASLKAAESGKPADIVAKMVDGSVQKYLKEVSLFN 238 HI A KP +S +V A+ +EKER + + +A SGKPADI AKMV+G ++K+L E++L Sbjct: 174 HIVAAKPQCVSEAEVDAETVEKERHIYTEQAIASGKPADIAAKMVEGRIRKFLAEITLNG 233 Query: 239 QSFVKNDKQTVEQMLKAANTSVKSFSMFVVGEGIEKK 275 Q+FV N QTV Q K T V SF + VG+GIEKK Sbjct: 234 QAFVMNPDQTVAQFSKENGTEVISFVRYKVGDGIEKK 270 >NMA0327 [J] COG0264 Translation elongation factor Ts NmA Neisseria meningitidis Z2491 Length = 284 Score = 263 bits (671), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 142/277 (51%), Positives = 186/277 (67%), Gaps = 9/277 (3%) Query: 1 MAAITAALVGELRAKTDAPMMECKKALTEAEGDMVRAEEILRVKLGSKASKASSRITSEG 60 MA ITA +V +LRA T MMECKKAL EAEG+ +AEEILR+K G+KA K + R +EG Sbjct: 1 MAEITAKMVADLRAATGLGMMECKKALVEAEGNFDKAEEILRIKSGAKAGKLAGRTAAEG 60 Query: 61 VVATYIAGGIGALVEINCETDFVTKNDEFIALANAVAKVIAEKNPADLAALAALPLGDKT 120 V+A I G +GALVE+NCETDFV K+ F+ AN VAK AEK PA + L+ L Sbjct: 61 VLAYAINGNVGALVEVNCETDFVAKDAGFVEFANFVAKTAAEKKPASVEELSEL------ 114 Query: 121 VEETRTELIGRIGENMSIRRFQRFETTGKLVSYLHGTRI--GVVVEFDGADEQVGKDVAM 178 VE R +I ++GENMS+RRFQ +T +LV+Y+HG GV+VE+ G+ E V + + M Sbjct: 115 VEAERKAIIAKLGENMSVRRFQVIDTANQLVAYIHGALATEGVLVEYKGS-EDVARKIGM 173 Query: 179 HIAAMKPVALSSDQVPADLIEKERSVASLKAAESGKPADIVAKMVDGSVQKYLKEVSLFN 238 HI A KP +S +V A+ +EKER + + +A SGKPADI AKMV+G ++K+L E++L Sbjct: 174 HIVAAKPQCVSEAEVDAETVEKERHIYTEQAIASGKPADIAAKMVEGRIRKFLAEITLNG 233 Query: 239 QSFVKNDKQTVEQMLKAANTSVKSFSMFVVGEGIEKK 275 Q+FV N QTV Q K T V SF + VG+GIEKK Sbjct: 234 QAFVMNPDQTVAQFSKENGTEVISFVRYKVGDGIEKK 270 >PM1985 [J] COG0264 Translation elongation factor Ts Pmu Pasteurella multocida Length = 282 Score = 233 bits (593), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 136/286 (47%), Positives = 179/286 (62%), Gaps = 9/286 (3%) Query: 1 MAAITAALVGELRAKTDAPMMECKKALTEAEGDMVRAEEILRVKLGSKASKASSRITSEG 60 MA ITA+LV ELR +T A MMECKKAL EA GD+ A + +R +KA+K + R+ +EG Sbjct: 1 MAEITASLVKELRERTGAGMMECKKALVEANGDIELAIDNMRKSGQAKAAKKAGRVAAEG 60 Query: 61 VVATYIAGGIGALVEINCETDFVTKNDEFIALANAVAKVIAEKNPADLAALAALPLGDKT 120 V+ I G G LVE+NCETDFV K+ F+ LAN VA + AL A Sbjct: 61 VILARIGAGFGVLVEMNCETDFVAKDAGFLGLANEVADYALANKGVTIEALQA------Q 114 Query: 121 VEETRTELIGRIGENMSIRRFQRFETTGKLV-SYLHGTRIGVVVEFDGADEQVGKDVAMH 179 EE R L+ +IGENM+IRR Q + G +V SYLHG +IGV+V ADE + K +AMH Sbjct: 115 FEEKRATLVAKIGENMNIRRVQFLD--GDVVGSYLHGAKIGVLVAGKNADEDLLKKIAMH 172 Query: 180 IAAMKPVALSSDQVPADLIEKERSVASLKAAESGKPADIVAKMVDGSVQKYLKEVSLFNQ 239 +AA +P + + V AD++ KER + A ESGKP +I KMV+G ++K+ EVSL Q Sbjct: 173 VAASRPEFVKPEDVSADVVAKEREIQVAIAMESGKPREIAEKMVEGRMKKFTGEVSLTGQ 232 Query: 240 SFVKNDKQTVEQMLKAANTSVKSFSMFVVGEGIEKKQDDFAAEVAA 285 FV + ++V + LK + V +F F VGEGIEK + DFAAEVAA Sbjct: 233 PFVMDPAKSVGEFLKESGADVTNFVRFEVGEGIEKVESDFAAEVAA 278 >lin1766 [J] COG0264 Translation elongation factor Ts Lin Listeria innocua Length = 294 Score = 231 bits (588), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 139/293 (47%), Positives = 183/293 (62%), Gaps = 7/293 (2%) Query: 1 MAAITAALVGELRAKTDAPMMECKKALTEAEGDMVRAEEILRVKLGSKASKASSRITSEG 60 MA ITA +V ELR KT A MM+CKKAL E EGDM +A + LR K +KA+K S R+ SEG Sbjct: 1 MANITAQMVKELREKTGAGMMDCKKALVETEGDMEKAIDYLREKGIAKAAKKSDRVASEG 60 Query: 61 VVATYIAGGIGALVEINCETDFVTKNDEFIALANAVAKVIAEKNPADL--AALAALPLGD 118 + ++E+N ETDFV KND F L +A+AK I E P L A +P G Sbjct: 61 MTHVISNEKHAVVLEVNAETDFVAKNDNFQQLVDALAKQILEVRPDSLEDALKTEMPNG- 119 Query: 119 KTVEETRTELIGRIGENMSIRRFQRFET--TGKLVSYLH-GTRIGVVVEFDGA-DEQVGK 174 +TV++ TE I +IGEN+S+RRF+ E Y+H RIGV+ +G D V K Sbjct: 120 QTVQDYITEAITKIGENISLRRFEVKEKADNSAFGEYIHMNGRIGVLTLLEGTTDTTVAK 179 Query: 175 DVAMHIAAMKPVALSSDQVPADLIEKERSVASLKAAESGKPADIVAKMVDGSVQKYLKEV 234 DVAMHIAA+ P +S + V + +E E+ V + +A GKPA+IV KMV+G ++KYL E+ Sbjct: 180 DVAMHIAAINPKYISREDVSTEEVEHEKEVLTQQALNEGKPANIVEKMVEGRLKKYLSEI 239 Query: 235 SLFNQSFVKNDKQTVEQMLKAANTSVKSFSMFVVGEGIEKKQDDFAAEVAAQV 287 SL +Q FVKN TV + +K + V SF F VGEGIEKK+D+F EV +QV Sbjct: 240 SLEDQPFVKNPDITVGEYVKQSGGKVVSFVRFEVGEGIEKKEDNFVEEVMSQV 292