BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0019.p (180 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0040 [TK] COG4567 Response regulator consisting of a CheY-lik... 238 5e-63 PA4493 [TK] COG4567 Response regulator consisting of a CheY-like... 169 3e-42 XF2578 [TK] COG4567 Response regulator consisting of a CheY-like... 159 4e-39 mlr5308 [TK] COG4567 Response regulator consisting of a CheY-lik... 153 2e-37 mlr6853 [TK] COG4567 Response regulator consisting of a CheY-lik... 149 3e-36 >RSc0040 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Rso Ralstonia solanacearum Length = 192 Score = 238 bits (607), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 124/189 (65%), Positives = 143/189 (75%), Gaps = 12/189 (6%) Query: 3 AAFLILDDNDVFASTLARSLSRRGFSAIVAHSGEDALKAAATTDFAYATIDLQL------ 56 A FLILDD+DVFA TLAR+L+RRGF+ +AH+G +AL A T FAY T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQTPFAYVTVDLHLAASDRG 64 Query: 57 -----QQDSGLQWIAPLREKLPHARLLVLTGYASIATTVQAIKAGADNYLAKPANLDSIL 111 DSGL WIAPLR+ LP AR+LVLTGYASIAT VQA+K GAD YLAKPAN+DSIL Sbjct: 65 LMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALEHSANDASADLDHTDAAAPLSVERLEWEHIQRVLVENQGNISSTARALNMHRRTLQR 171 AL+ ++A A+ + APLSV RLEWEHIQRVL E+ GNIS+TARALNMHRRTLQR Sbjct: 125 LALQVGVSEAVAE-QTMENPAPLSVARLEWEHIQRVLSEHGGNISATARALNMHRRTLQR 183 Query: 172 KLAKRPVAK 180 KL KRPVAK Sbjct: 184 KLGKRPVAK 192 >PA4493 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Pae Pseudomonas aeruginosa Length = 186 Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/178 (52%), Positives = 120/178 (67%), Gaps = 8/178 (4%) Query: 5 FLILDDNDVFASTLARSLSRRGFSAIVAHSGEDALKAAATTDFAYATIDLQLQQDSGLQW 64 L++DD+ F LAR++SRRG A S E+ L A YA +DL+++ DSGL Sbjct: 15 LLLVDDDPTFTRVLARAMSRRGLRVSTAGSAEEGLALAQQDTPDYAVLDLKMEGDSGLVL 74 Query: 65 IAPLREKLPHARLLVLTGYASIATTVQAIKAGADNYLAKPANLDSILSAL--EHSANDAS 122 + L E R+++LTGY+SIAT V+AIK GA NYL KPA+ D +L+AL EH Sbjct: 75 LPKLLELHADMRVVILTGYSSIATAVEAIKRGACNYLCKPADADDVLAALLSEH------ 128 Query: 123 ADLDHTDAAAPLSVERLEWEHIQRVLVENQGNISSTARALNMHRRTLQRKLAKRPVAK 180 ADLD P+SV+RL+WEHIQRVL E++GNIS+TARAL MHRRTLQRKL KRPV + Sbjct: 129 ADLDTLVPENPMSVDRLQWEHIQRVLAEHEGNISATARALGMHRRTLQRKLQKRPVRR 186 >XF2578 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Xfa Xylella fastidiosa 9a5c Length = 192 Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 87/173 (50%), Positives = 114/173 (65%), Gaps = 1/173 (0%) Query: 6 LILDDNDVFASTLARSLSRRGFSAIVAHSGEDALKAAATTDFAYATIDLQLQQDSGLQWI 65 L++DD+ ++ TL RSL RRG + A AL AA + ++A +DL+L QDSGL I Sbjct: 10 LLVDDDTLYLRTLQRSLGRRGVDTVTATDTVSALTAARSMLPSFALLDLKLGQDSGLALI 69 Query: 66 APLREKLPHARLLVLTGYASIATTVQAIKAGADNYLAKPANLDSILSAL-EHSANDASAD 124 LR R+L++TGYASIAT V+AIK GAD YL KPAN+++IL A+ E +AN + D Sbjct: 70 QELRAIRSDMRILLVTGYASIATAVEAIKRGADEYLPKPANINTILRAISEDTANGLTPD 129 Query: 125 LDHTDAAAPLSVERLEWEHIQRVLVENQGNISSTARALNMHRRTLQRKLAKRP 177 D + + RL+WEHIQ+ L E GNIS+ AR L MHRR+LQRKL KRP Sbjct: 130 KDESALHTMTPLSRLQWEHIQQALHETDGNISAAARLLGMHRRSLQRKLTKRP 182 >mlr5308 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Mlo Mesorhizobium loti Length = 187 Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 79/173 (45%), Positives = 113/173 (65%), Gaps = 5/173 (2%) Query: 4 AFLILDDNDVFASTLARSLSRRGFSAIVAHSGEDALKAAATTDFAYATIDLQLQQDSGLQ 63 + LI+DD+ F + LAR++ RGF A S E+A+ A AYA +D++L +GL Sbjct: 17 SLLIVDDDKPFLTRLARAMETRGFVVETAESVEEAVGKARANPPAYAVVDMRLGDGNGLD 76 Query: 64 WIAPLREKLPHARLLVLTGYASIATTVQAIKAGADNYLAKPANLDSILSALEHSANDASA 123 +A +REK +R ++LTGY +IAT V A+K GA +YL+KPA+ D I +AL ++ + +A Sbjct: 77 VVAAIREKREDSRTIILTGYGNIATAVTAVKLGAVDYLSKPADADDIFAALTRTSGERAA 136 Query: 124 DLDHTDAAAPLSVERLEWEHIQRVLVENQGNISSTARALNMHRRTLQRKLAKR 176 ++ P+S +R+ WEHIQRV + N+S TAR LNMHRRTLQR LAKR Sbjct: 137 PPEN-----PMSADRVRWEHIQRVYEMCERNVSETARRLNMHRRTLQRILAKR 184 >mlr6853 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Mlo Mesorhizobium loti Length = 182 Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 83/176 (47%), Positives = 108/176 (61%), Gaps = 5/176 (2%) Query: 4 AFLILDDNDVFASTLARSLSRRGFSAIVAHSGEDALKAAATTDFAYATIDLQLQ-QDSGL 62 + I++D+ FA TL RS +R + +V H ED L A T AYA +DL+L + SGL Sbjct: 10 SLFIVEDDATFAKTLKRSFEKRDYDVVVCHGREDLLGALETAVPAYAVVDLKLGARGSGL 69 Query: 63 QWIAPLREKLPHARLLVLTGYASIATTVQAIKAGADNYLAKPANLDSILSALEHSANDAS 122 + + L + R++VLTG+ASIAT V+AIK GA +YLAKPAN D I +A + D S Sbjct: 70 ECVKLLSARDTSMRIVVLTGFASIATAVEAIKLGACHYLAKPANTDDIEAAFGRAEGDVS 129 Query: 123 ADLDHTDAAAPLSVERLEWEHIQRVLVENQGNISSTARALNMHRRTLQRKLAKRPV 178 L ++ P S++ LEWE I LVE NIS TAR L +HRRTL RKL KR V Sbjct: 130 VSL----SSRPTSIKNLEWERIHETLVETGFNISETARRLGLHRRTLARKLEKRVV 181