BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0268.p (339 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1110 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 370 e-102 PA2534 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 315 1e-85 PA2877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 293 3e-79 mlr1983 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 285 1e-76 AGl999 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 281 1e-75 >RSp1110 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 315 Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust. Identities = 174/298 (58%), Positives = 225/298 (75%) Query: 1 MDRFQAMQVFSAVVDANSFTRAADNLNLPRTTVTTIVQGLESLLQVRLLNRTTRRISLTP 60 MDR QAMQVF+ VV+A+SFT+AADNL LPR TVT +VQ LE+ L VRLL+RTTRR+++T Sbjct: 1 MDRLQAMQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTA 60 Query: 61 DGAAYYERCVRILAEVDETEASFRNVTRGPQGRLRIDVPASIGRLLLLPNLCDFYAKYPD 120 DGAAYYERCVRIL +++ETEA+F G +G LRIDVP SIG+ LL+P + DF+ YP Sbjct: 61 DGAAYYERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDAYPG 120 Query: 121 IELVMGMSDRPVDMVQEAVDCVIRVGDLQDSSMVARRIGTFQAVTCGSPTYFERHGMPHT 180 ++L +GMSDR VD+VQE VDC +RVG+LQDS++VARRIG V C SP Y ER+G P + Sbjct: 121 LQLEIGMSDRTVDLVQEGVDCAVRVGELQDSTLVARRIGQLSMVNCASPDYLERYGTPRS 180 Query: 181 IEDLQNHKSVHYFSSRTGRTIDWDFMVDGVAREVKMAGKLSVNDGDAYVACALQGFGLVQ 240 +EDLQ+H +V+YFS R GR +DWDF++DG + K+ +SVND ++ +ACAL G GL+Q Sbjct: 181 LEDLQDHIAVNYFSPRNGRRMDWDFVIDGQKQIHKVRSLVSVNDAESAMACALHGLGLLQ 240 Query: 241 APLYMIQPFLEDGRLVEILSQWKPVPMAISVVYLHNRHLSPKVRAFVDWVAELFATCP 298 + L+ G+LVE+L + P+ +SV+Y HNRHLSPKVR FVDWVA LFA P Sbjct: 241 TARLLAYEHLQSGQLVEVLPDYISEPLPVSVIYPHNRHLSPKVRVFVDWVAMLFADHP 298 >PA2534 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 303 Score = 315 bits (806), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 146/295 (49%), Positives = 204/295 (69%) Query: 1 MDRFQAMQVFSAVVDANSFTRAADNLNLPRTTVTTIVQGLESLLQVRLLNRTTRRISLTP 60 MDRFQAMQ F+ +V+ +F +AAD+L LPR +VT +Q LE+ L V+LL RTTR++SLT Sbjct: 1 MDRFQAMQAFTRIVELGAFGKAADSLELPRASVTQAIQQLEAHLGVQLLQRTTRQVSLTL 60 Query: 61 DGAAYYERCVRILAEVDETEASFRNVTRGPQGRLRIDVPASIGRLLLLPNLCDFYAKYPD 120 DG AYYERCVR+LA+++E E+ F V P+GRLR+D+P ++GR+ ++P L +F +YP+ Sbjct: 61 DGQAYYERCVRLLADLEEAESCFPRVLNNPRGRLRVDLPGALGRMRVIPFLPEFCERYPE 120 Query: 121 IELVMGMSDRPVDMVQEAVDCVIRVGDLQDSSMVARRIGTFQAVTCGSPTYFERHGMPHT 180 +EL + +DR VD+++E DCV+RVG+L DSS+V R + VTC S Y ERHG P Sbjct: 121 LELQLSSNDRLVDLLREGADCVLRVGELHDSSLVGRHLADLPQVTCASAAYLERHGHPRQ 180 Query: 181 IEDLQNHKSVHYFSSRTGRTIDWDFMVDGVAREVKMAGKLSVNDGDAYVACALQGFGLVQ 240 + +L H +V+Y S +GRT D++F VDG R + M ++SVN+ DAYVA G GL+Q Sbjct: 181 LAELGGHLAVNYQSPSSGRTFDFEFSVDGRLRTLPMRSRVSVNNADAYVAACRAGLGLIQ 240 Query: 241 APLYMIQPFLEDGRLVEILSQWKPVPMAISVVYLHNRHLSPKVRAFVDWVAELFA 295 AP Y + L DG L ++L +W P +A+ VY R LSP+VR FVDW+ ELF Sbjct: 241 APHYHVAAGLADGSLRQVLGEWLPPSLALHAVYPSQRQLSPRVRVFVDWLVELFG 295 >PA2877 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 297 Score = 293 bits (751), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 138/294 (46%), Positives = 197/294 (67%), Gaps = 1/294 (0%) Query: 1 MDRFQAMQVFSAVVDANSFTRAADNLNLPRTTVTTIVQGLESLLQVRLLNRTTRRISLTP 60 MDR +M+VF V + SFT+AAD L++PR TV+ VQ LE+ L RLL+RTTR++ LT Sbjct: 1 MDRLDSMRVFLRVAETGSFTKAADLLDMPRATVSAAVQQLEAQLGSRLLHRTTRQVQLTH 60 Query: 61 DGAAYYERCVRILAEVDETEASFRNVTRGPQGRLRIDVPASIGRLLLLPNLCDFYAKYPD 120 DG+ ERC +L +++E E+ F + +R GRL++DVP+ + RLL+ P L +F+ ++PD Sbjct: 61 DGSVVLERCRHLLEDMEELESLFHDGSRA-SGRLKVDVPSRVARLLIAPALPEFFRQHPD 119 Query: 121 IELVMGMSDRPVDMVQEAVDCVIRVGDLQDSSMVARRIGTFQAVTCGSPTYFERHGMPHT 180 IEL +G SDR VD+VQE VDCV+RVG L +SS+VARR+G Q + C SP Y E HG P T Sbjct: 120 IELELGSSDRSVDLVQEGVDCVLRVGQLGNSSLVARRLGEMQLINCASPAYLEEHGEPRT 179 Query: 181 IEDLQNHKSVHYFSSRTGRTIDWDFMVDGVAREVKMAGKLSVNDGDAYVACALQGFGLVQ 240 DL H +V+Y S +GR + W++ DG + +++VN+ ++Y+AC L G GL+Q Sbjct: 180 PADLDRHWAVNYASPSSGRVLPWEYREDGRTLTRALRSRVTVNNAESYIACCLSGLGLIQ 239 Query: 241 APLYMIQPFLEDGRLVEILSQWKPVPMAISVVYLHNRHLSPKVRAFVDWVAELF 294 P Y ++ L+ G L E+L QW+ M +Y H RHLS +VRAFVDW+ +L Sbjct: 240 IPAYDVREHLQRGELREVLPQWRAEAMPAYALYPHRRHLSRRVRAFVDWLEQLL 293 >mlr1983 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 297 Score = 285 bits (729), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 138/299 (46%), Positives = 193/299 (64%), Gaps = 2/299 (0%) Query: 1 MDRFQAMQVFSAVVDANSFTRAADNLNLPRTTVTTIVQGLESLLQVRLLNRTTRRISLTP 60 MDR M++F V++ SFT AA +L LPR+T T ++ LE L RLL RTTR+++ T Sbjct: 1 MDRLDTMRLFVRVLERRSFTAAAADLGLPRSTATEAIRRLEEHLGARLLERTTRQVNATQ 60 Query: 61 DGAAYYERCVRILAEVDETEASFRNVTRGPQGRLRIDVPASIGRLLLLPNLCDFYAKYPD 120 DG AYY RC+ ILAE+++ EA+FRN P G LRID + R LLP L +F A+Y Sbjct: 61 DGEAYYRRCLPILAEIEDAEAAFRNAE--PFGLLRIDASTLLTRTFLLPRLPEFLARYSR 118 Query: 121 IELVMGMSDRPVDMVQEAVDCVIRVGDLQDSSMVARRIGTFQAVTCGSPTYFERHGMPHT 180 I+L +G SDR VD+V+E VDCVIRVG+ DS M+ RR+G + +TC SP Y RHG P + Sbjct: 119 IDLQIGQSDRLVDLVREGVDCVIRVGEPPDSGMIMRRLGMIREMTCASPAYLSRHGTPAS 178 Query: 181 IEDLQNHKSVHYFSSRTGRTIDWDFMVDGVAREVKMAGKLSVNDGDAYVACALQGFGLVQ 240 + L H++V + SSRTG + ++F V+G RE+++ G+++ N+ D A G GL+Q Sbjct: 179 PDALDGHQAVGFVSSRTGEVLPFEFTVNGKTREIRLPGRVAANNSDTAADLARLGLGLIQ 238 Query: 241 APLYMIQPFLEDGRLVEILSQWKPVPMAISVVYLHNRHLSPKVRAFVDWVAELFATCPL 299 AP Y + L G LVE+L+ + P P +S +Y NR LSP++R F+DW A +FA L Sbjct: 239 APRYRFEKDLAQGMLVEVLADYPPSPTPLSALYPQNRQLSPRLRVFLDWAARIFAEANL 297 >AGl999 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 345 Score = 281 bits (720), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 128/294 (43%), Positives = 195/294 (66%) Query: 1 MDRFQAMQVFSAVVDANSFTRAADNLNLPRTTVTTIVQGLESLLQVRLLNRTTRRISLTP 60 +DR ++F+ VVD SFTRAAD L +PR++V+ VQ LE + RLLNRTTR++S T Sbjct: 47 LDRIDLFRIFTRVVDCASFTRAADTLGIPRSSVSAAVQELEGRVGARLLNRTTRKVSPTE 106 Query: 61 DGAAYYERCVRILAEVDETEASFRNVTRGPQGRLRIDVPASIGRLLLLPNLCDFYAKYPD 120 DG+A+YERC R++A+V++TE FR P GRLRIDVP IGRL++ P L F YP Sbjct: 107 DGSAFYERCQRLIADVEDTENLFRQTAAQPSGRLRIDVPGRIGRLVIAPALPQFLDLYPQ 166 Query: 121 IELVMGMSDRPVDMVQEAVDCVIRVGDLQDSSMVARRIGTFQAVTCGSPTYFERHGMPHT 180 I++ +G++DR VD+V++ +DCV+RVG L DS ++AR IG + + SP Y ++G P T Sbjct: 167 IDISLGVTDRAVDLVEDNIDCVLRVGPLSDSGLIARPIGKLRLINVASPAYLAQYGAPKT 226 Query: 181 IEDLQNHKSVHYFSSRTGRTIDWDFMVDGVAREVKMAGKLSVNDGDAYVACALQGFGLVQ 240 DL H +V+Y S +GR +W+++ + V M +++VN+ +AY+AC L G GL+Q Sbjct: 227 PHDLSRHWAVNYASPSSGRVENWEWIENDALHSVPMRSRVTVNNAEAYIACCLAGLGLIQ 286 Query: 241 APLYMIQPFLEDGRLVEILSQWKPVPMAISVVYLHNRHLSPKVRAFVDWVAELF 294 P Y ++ LE G L+E++ + PM ++++Y H +HLS +++ F +W+ L Sbjct: 287 IPAYDVRLHLESGELIEVMPGHRAEPMPMTLLYSHRQHLSRRLQVFAEWLEALL 340