BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0265.p (316 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1112 [M] COG0845 Membrane-fusion protein Rso Ralstonia solana... 397 e-110 AGc4505 [M] COG0845 Membrane-fusion protein Atu Agrobacterium tu... 271 1e-72 PA2493 [M] COG0845 Membrane-fusion protein Pae Pseudomonas aerug... 263 6e-70 SMc01094 [M] COG0845 Membrane-fusion protein Sme Sinorhizobium m... 256 4e-68 STM0352 [M] COG0845 Membrane-fusion protein Sty Salmonella typhi... 221 2e-57 >RSp1112 [M] COG0845 Membrane-fusion protein Rso Ralstonia solanacearum Length = 438 Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/312 (62%), Positives = 252/312 (80%), Gaps = 5/312 (1%) Query: 1 VHFKDGAMVKKGDVLFTIDPRPYAAEVARAQAQLAGAEARAAYTASDVARGQRLLGDNAI 60 VHFKDG++V+KGD LFTIDPRPYAAEVAR QA L A++R AYTAS++ R Q+L+ DNAI Sbjct: 83 VHFKDGSIVRKGDPLFTIDPRPYAAEVARTQAALTAAKSRVAYTASELERAQKLVADNAI 142 Query: 61 AKRDYEEKQNASREAAANVQAAQAALRSARLNLEYTQIVAPVSGRMSRAEVTVGNIVSVG 120 A+R++EEK+NA+REA AN+Q A AAL +A+LNLEYT+IVAPV+GR+SRAE+TVGN+V+ G Sbjct: 143 ARREFEEKENAAREAQANLQGAAAALDAAKLNLEYTRIVAPVAGRVSRAEITVGNVVATG 202 Query: 121 SATPALSTLVSMSKIYASFDVDEQSFLKYVNPARAKGTSVAVFMGLANEDAYSREGKVGS 180 A P L+TLVS+S +Y +FD DEQ++L++ + A+G V++GLANED Y+REG + S Sbjct: 203 GAAPVLTTLVSVSPMYVAFDADEQTYLRF-SANTAQGARTPVYIGLANEDGYTREGTIQS 261 Query: 181 IDNRIDTSSGTIRVRAVFDNADGQLLPGLYARIRLGGGAPRDALLVDEKALGTDQDKRFV 240 +DNR+D SGTIRVRA DNADG+L PGLYAR+++G GAP DA+L+ +KA+GTDQDK+FV Sbjct: 262 VDNRLDVRSGTIRVRATVDNADGRLTPGLYARVKMGSGAPHDAVLISDKAIGTDQDKKFV 321 Query: 241 LVLDKDNHATYREVRVGANQDGLRVIESGLKSGERVVVNGLQRVRPGDTVAPNLVPM--- 297 LV+D N +YR V +GA+ DGLRV+++GLK GER+VVNG+QRVRPGD VAPN V M Sbjct: 322 LVVDAANKTSYRPVTLGASTDGLRVVKAGLKVGERIVVNGIQRVRPGDPVAPNAVTMESL 381 Query: 298 -VKVAGAGGTAP 308 K A GT P Sbjct: 382 VAKRAARPGTPP 393 >AGc4505 [M] COG0845 Membrane-fusion protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 396 Score = 271 bits (693), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 139/299 (46%), Positives = 216/299 (72%), Gaps = 6/299 (2%) Query: 1 VHFKDGAMVKKGDVLFTIDPRPYAAEVARAQAQLAGAEARAAYTASDVARGQRLLGDNAI 60 VHF++GA+VK+GD LFTIDP PY A VA A+ Q+A AEA+ + +++ RG+RL + I Sbjct: 89 VHFREGALVKEGDPLFTIDPAPYQAAVAGAEGQVASAEAKVSLAKTELDRGRRLSDNRTI 148 Query: 61 AKRDYEEKQNASREAAANVQAAQAALRSARLNLEYTQIVAPVSGRMSRAEVTVGNIVSVG 120 ++ D +++Q++ +A A ++AA+AAL +A+L+L YT+I+APVSGR+ R E+T GN+V+ G Sbjct: 149 SQSDLDQRQSSFADAEAQLRAARAALTTAQLDLGYTEIIAPVSGRVGRIEITAGNLVAAG 208 Query: 121 SATPALSTLVSMSKIYASFDVDE------QSFLKYVNPARAKGTSVAVFMGLANEDAYSR 174 S +PAL+TLVS++ IYASF+ E + L + A + V +G +++ Sbjct: 209 STSPALTTLVSVNPIYASFNASEGVVAKALAELPKTDGALPALEQIPVEIGTLSDEGTPI 268 Query: 175 EGKVGSIDNRIDTSSGTIRVRAVFDNADGQLLPGLYARIRLGGGAPRDALLVDEKALGTD 234 +G + IDN++D++SGTI VRA+FDN DG+L+PG + R+R+G P + +++ ++A+GTD Sbjct: 269 KGTLHLIDNQVDSASGTIGVRAIFDNPDGRLIPGQFVRVRMGEPKPENRIVISDRAIGTD 328 Query: 235 QDKRFVLVLDKDNHATYREVRVGANQDGLRVIESGLKSGERVVVNGLQRVRPGDTVAPN 293 QDKRFV V+D +N +YR+++ GA DG R+I+SGL +G+ +VVNGLQR+RPG T+AP Sbjct: 329 QDKRFVFVVDAENKVSYRQIKPGAPADGQRIIDSGLAAGDTIVVNGLQRIRPGATIAPQ 387 >PA2493 [M] COG0845 Membrane-fusion protein Pae Pseudomonas aeruginosa Length = 414 Score = 263 bits (671), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 152/301 (50%), Positives = 202/301 (67%), Gaps = 6/301 (1%) Query: 1 VHFKDGAMVKKGDVLFTIDPRPYAAEVARAQAQLAGAEARAAYTASDVARGQRLLGDNAI 60 V F +GA+VKKGD+LF IDPRP+ AEV R +AQL A A A + ++ RG+RL NAI Sbjct: 78 VAFHEGALVKKGDLLFQIDPRPFEAEVKRLEAQLQQARAAQARSVNEAQRGERLRASNAI 137 Query: 61 AKRDYEEKQNASREAAANVQAAQAALRSARLNLEYTQIVAPVSGRMSRAEVTVGNIVSVG 120 + + + A++EA A V A QA L +ARLNL +T+I AP+ GR+SRAEVT GN+V+ G Sbjct: 138 SAELADARTTAAQEAKAAVAATQAQLDAARLNLSFTRITAPIDGRVSRAEVTAGNLVNSG 197 Query: 121 SATPALSTLVSMSKIYASFDVDEQSFLKYVNPARAKG----TSVAVFMGLANEDAYSREG 176 L+TLVS K+YA FD DE+ FLKYV AR G + V++GL++ED G Sbjct: 198 ETL--LTTLVSTDKVYAYFDADERVFLKYVELARQAGRDTRSESPVYLGLSSEDGNPHLG 255 Query: 177 KVGSIDNRIDTSSGTIRVRAVFDNADGQLLPGLYARIRLGGGAPRDALLVDEKALGTDQD 236 ++ +DN+++ +GTIR RAVFDNA G+ PGLY R++L G A L+ ++A+GTD Sbjct: 256 RLDFLDNQVNPRTGTIRGRAVFDNAKGEFTPGLYVRLKLVGSKTYAATLIKDEAVGTDLG 315 Query: 237 KRFVLVLDKDNHATYREVRVGANQDGLRVIESGLKSGERVVVNGLQRVRPGDTVAPNLVP 296 K+FVLVLD DN YR V +G +GLR++ SGL G+R+VVNGLQRVRPG V P V Sbjct: 316 KKFVLVLDGDNKTVYRTVEMGPKLEGLRIVRSGLSKGDRIVVNGLQRVRPGMQVDPQKVE 375 Query: 297 M 297 M Sbjct: 376 M 376 >SMc01094 [M] COG0845 Membrane-fusion protein Sme Sinorhizobium meliloti Length = 402 Score = 256 bits (654), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 138/298 (46%), Positives = 208/298 (69%), Gaps = 6/298 (2%) Query: 2 HFKDGAMVKKGDVLFTIDPRPYAAEVARAQAQLAGAEARAAYTASDVARGQRLLGDNAIA 61 HF++GA+V+KGD+L TIDP P+AA V RA+AQ+A AEAR A +++ RG++L+ +AI Sbjct: 94 HFREGALVEKGDLLVTIDPEPFAAAVERAEAQVAAAEARVALARTELERGRKLVTTSAIP 153 Query: 62 KRDYEEKQNASREAAANVQAAQAALRSARLNLEYTQIVAPVSGRMSRAEVTVGNIVSVGS 121 + +++ + EA AN+++A+AAL +A+L+LEYT++ AP+SGR+ R VT GN+V+ G+ Sbjct: 154 QSGVDQRLSVYDEARANLRSAKAALHTAKLDLEYTEVRAPISGRVGRLNVTAGNLVTAGT 213 Query: 122 ATPALSTLVSMSKIYASFDVDEQSFLKYVNPARAKGTS------VAVFMGLANEDAYSRE 175 A+P L+TLVS+ IYASF+V E+ + A S + V +G + ++ Sbjct: 214 ASPVLTTLVSVDPIYASFNVSEEVVAAALAKLSASAGSIDAIERIPVEIGTSADEGTPIT 273 Query: 176 GKVGSIDNRIDTSSGTIRVRAVFDNADGQLLPGLYARIRLGGGAPRDALLVDEKALGTDQ 235 G + I+N +D ++GTIRVRA NADG+L+PG + RIR+G P + L++ ++A+ +DQ Sbjct: 274 GHIQLINNEVDAATGTIRVRAELTNADGRLIPGQFVRIRIGDPQPEEKLVISDRAVSSDQ 333 Query: 236 DKRFVLVLDKDNHATYREVRVGANQDGLRVIESGLKSGERVVVNGLQRVRPGDTVAPN 293 DK+FVLV+ DN YR+V +G DGLR++E+GLK GE ++VNGLQRVRPG VAP Sbjct: 334 DKKFVLVVGADNKVEYRQVTLGPVADGLRIVENGLKPGESIIVNGLQRVRPGVVVAPQ 391 >STM0352 [M] COG0845 Membrane-fusion protein Sty Salmonella typhimurium LT2 Length = 408 Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 127/315 (40%), Positives = 191/315 (60%), Gaps = 4/315 (1%) Query: 1 VHFKDGAMVKKGDVLFTIDPRPYAAEVARAQAQLAGAEARAAYTASDVARGQRLLGDNAI 60 + +G +V +G +LF IDPRP+ + A AQL AE A +D R QRL+ A+ Sbjct: 86 ISVPEGRLVSRGQLLFQIDPRPFEVALDTAVAQLRQAEVLARQAQADFDRIQRLVASGAV 145 Query: 61 AKRDYEEKQNASREAAANVQAAQAALRSARLNLEYTQIVAPVSGRMSRAEVTVGNIVSVG 120 ++++ ++ A +Q+A+AA+ +ARL L +T+I AP++GR+ R VT GN+VS G Sbjct: 146 SRKNADDVTATRNARQAQMQSAKAAVAAARLELSWTRITAPIAGRVDRILVTRGNLVSGG 205 Query: 121 SATPA--LSTLVSMSKIYASFDVDEQSFLKYVNPARAKGTSVAVFMGLANEDAYSREGKV 178 A A L+T+VS + +Y FD+DE ++LK + R+ V MGL ++ +G + Sbjct: 206 VAGNATLLTTIVSHNPMYVYFDIDEATWLKALRHTRSDKNPPVVNMGLTTDNGLPYQGVL 265 Query: 179 GSIDNRIDTSSGTIRVRAVFDNADGQLLPGLYARIRLGGGAPRDALLVDEKALGTDQDKR 238 + N+++ S+GTIR RAV + DG L PGL+ARI L G PR+ +L+D+ A+ DQ K Sbjct: 266 DFMGNQMNRSTGTIRARAVIPDPDGMLSPGLFARISLPIGEPRETVLIDDLAVSADQGKN 325 Query: 239 FVLVLDKDNHATYREVRVGANQDGLRVIESGLKSGERVVVNGLQRVRPGDTVAPNLVPMV 298 +VL++ K+N YR V +G DG RV+ G+ GE++++ GL VRPG TVAP LVPM Sbjct: 326 YVLIVGKENQVEYRPVELGQMVDGFRVVTQGVLPGEKIILKGL--VRPGMTVAPRLVPMR 383 Query: 299 KVAGAGGTAPAAKAD 313 + TA KAD Sbjct: 384 QNVTDKQTATLTKAD 398