BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0238.p         (198 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0287 [J] COG0018 Arginyl-tRNA synthetase Rso Ralstonia solana...   233   2e-61
XF0147 [J] COG0018 Arginyl-tRNA synthetase Xfa Xylella fastidios...   193   2e-49
aq_923 [J] COG0018 Arginyl-tRNA synthetase Aae Aquifex aeolicus       147   2e-35
BH3808 [J] COG0018 Arginyl-tRNA synthetase Bha Bacillus halodurans    145   6e-35
BS_argS [J] COG0018 Arginyl-tRNA synthetase Bsu Bacillus subtilis     133   3e-31

>RSc0287 [J] COG0018 Arginyl-tRNA synthetase Rso Ralstonia solanacearum
          Length = 600

 Score =  233 bits (595), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/157 (72%), Positives = 128/157 (81%), Gaps = 8/157 (5%)

Query: 1   LIKAGKTYELDGALWLKTTDYGDDKDRVMKKGDGTYTYFVPDVAYHITKWQRGFGKVINI 60
           LI AGKTYE +GALWL+TTD GDDKDRVM+K DG+YTYFVPDVAYH TKW RGF +VIN+
Sbjct: 285 LIAAGKTYEQEGALWLRTTDDGDDKDRVMRKSDGSYTYFVPDVAYHTTKWGRGFTQVINV 344

Query: 61  QGSDHHGTIARVRAGLQAANVGIPQGYPDYVLHKMVTVMKNGEEVKISKRAGSYVTLRDL 120
           QGSDHHGTIARVRAGLQ  ++GIP+GYPDYVLHKMVTVMK+G EVKISKRAGSYVT+RDL
Sbjct: 345 QGSDHHGTIARVRAGLQGLDLGIPKGYPDYVLHKMVTVMKDGAEVKISKRAGSYVTVRDL 404

Query: 121 IEWSNGSNDDNAA--------EAGDTDDAGDLTRGRD 149
           IEWSNG  +  A         E+G  +  G  TRGRD
Sbjct: 405 IEWSNGDAESEAGVDTIRACVESGAPNWPGRFTRGRD 441


>XF0147 [J] COG0018 Arginyl-tRNA synthetase Xfa Xylella fastidiosa 9a5c
          Length = 586

 Score =  193 bits (491), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 85/122 (69%), Positives = 105/122 (86%)

Query: 1   LIKAGKTYELDGALWLKTTDYGDDKDRVMKKGDGTYTYFVPDVAYHITKWQRGFGKVINI 60
           LI +G TYE  GALWLK+T +GDDKDRVM+K DG+YTYFVPD+AYH++KWQRG+ + I  
Sbjct: 305 LINSGHTYEEGGALWLKSTHFGDDKDRVMRKSDGSYTYFVPDIAYHLSKWQRGYERAITE 364

Query: 61  QGSDHHGTIARVRAGLQAANVGIPQGYPDYVLHKMVTVMKNGEEVKISKRAGSYVTLRDL 120
            G+DHHG++ARV AGLQA  +GIP G+P+YVLH+MVTVM+ GEEVK+SKR+G YVTLRDL
Sbjct: 365 LGADHHGSLARVHAGLQALEIGIPPGWPEYVLHQMVTVMRGGEEVKLSKRSGGYVTLRDL 424

Query: 121 IE 122
           IE
Sbjct: 425 IE 426


>aq_923 [J] COG0018 Arginyl-tRNA synthetase Aae Aquifex aeolicus
          Length = 583

 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 95/122 (77%), Gaps = 2/122 (1%)

Query: 1   LIKAGKTYELDGALWLKTTDYGDDKDRVMKKGDGTYTYFVPDVAYHITKWQRGFGKVINI 60
           L + G  YE DGALWLKT+ +GDDKDRV+K+ DGTYTYF  D+AYH  K++RGF KVIN+
Sbjct: 303 LKEKGYVYEKDGALWLKTSLFGDDKDRVVKRSDGTYTYFASDIAYHYNKFKRGFEKVINV 362

Query: 61  QGSDHHGTIARVRAGLQAANVGIPQGYPDYVLHKMVTVMKNGEEVKISKRAGSYVTLRDL 120
            G+DHHG I RV+A L+   + IP+ + + +L +MV + + G+EVK+SKRAG++VTLR+L
Sbjct: 363 WGADHHGYIPRVKAALKM--LEIPEDWLEILLVQMVKLFREGKEVKMSKRAGTFVTLREL 420

Query: 121 IE 122
           ++
Sbjct: 421 LD 422


>BH3808 [J] COG0018 Arginyl-tRNA synthetase Bha Bacillus halodurans
          Length = 556

 Score =  145 bits (366), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 92/122 (75%), Gaps = 2/122 (1%)

Query: 1   LIKAGKTYELDGALWLKTTDYGDDKDRVMKKGDGTYTYFVPDVAYHITKWQRGFGKVINI 60
           L + GKTYE DGALW ++T+YGDDKDRV+ K DG+YTY  PD++YH  K+ RGF K+INI
Sbjct: 279 LKEKGKTYEQDGALWFRSTEYGDDKDRVLVKNDGSYTYLTPDISYHEDKFLRGFEKLINI 338

Query: 61  QGSDHHGTIARVRAGLQAANVGIPQGYPDYVLHKMVTVMKNGEEVKISKRAGSYVTLRDL 120
            G+DHHG I R++A +QA  +G  +   D  + +MV++ +NGE+VK+SKR G  VTLRDL
Sbjct: 339 WGADHHGYIPRMKAAIQA--LGYEKDQLDVQIIQMVSLFQNGEKVKMSKRTGKAVTLRDL 396

Query: 121 IE 122
           +E
Sbjct: 397 ME 398


>BS_argS [J] COG0018 Arginyl-tRNA synthetase Bsu Bacillus subtilis
          Length = 556

 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/122 (51%), Positives = 88/122 (72%), Gaps = 2/122 (1%)

Query: 1   LIKAGKTYELDGALWLKTTDYGDDKDRVMKKGDGTYTYFVPDVAYHITKWQRGFGKVINI 60
           L + G  YE DGA W ++T +GDDKDRV+ K DGTYTY +PD+AYH  K  RGF K+IN+
Sbjct: 279 LREKGHVYEEDGATWFRSTTFGDDKDRVLIKKDGTYTYLLPDIAYHKDKLDRGFDKLINV 338

Query: 61  QGSDHHGTIARVRAGLQAANVGIPQGYPDYVLHKMVTVMKNGEEVKISKRAGSYVTLRDL 120
            G+DHHG I R++A ++A  +G  +G  +  + ++V + KNGE++K+SKR G  VT+RDL
Sbjct: 339 WGADHHGYIPRMKAAIEA--LGYEKGTLEVEIIQLVHLYKNGEKMKMSKRTGKAVTMRDL 396

Query: 121 IE 122
           IE
Sbjct: 397 IE 398