BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0233.p         (332 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb20776_2 [T] COG2114 Adenylate cyclase, family 3 (some protein...   111   2e-24
SMc04307_2 [T] COG2114 Adenylate cyclase, family 3 (some protein...   104   3e-22
sll0646_2 [T] COG2114 Adenylate cyclase, family 3 (some proteins...    87   4e-17
all1118_2 [T] COG2114 Adenylate cyclase, family 3 (some proteins...    86   1e-16
all1904_3 [T] COG2114 Adenylate cyclase, family 3 (some proteins...    84   3e-16

>SMb20776_2 [T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP
           domain) Sme Sinorhizobium meliloti
          Length = 283

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/107 (50%), Positives = 71/107 (66%), Gaps = 2/107 (1%)

Query: 221 IVNLFGEYVAPELVAEMAANPASYNMEGESRELTVMFSDVRGFTTISEGLQ--PNELREY 278
           I   F +Y++P LV  +A +P+   + GE R LTV+F DVRGFTTISE ++  P  L   
Sbjct: 10  ITRAFSQYLSPALVERLARDPSQLKLGGERRTLTVLFCDVRGFTTISEDMKDDPEGLTTL 69

Query: 279 INAYLTAMSEDIRGNRGTLDKYIGDAVMAFWGAPIELPDHAARALLA 325
           IN  LT +SE +   RGT+DKYIGD +MAFW AP++ PDHA  A+ A
Sbjct: 70  INRLLTPLSEAVLNRRGTIDKYIGDCLMAFWNAPLDDPDHAVHAVQA 116


>SMc04307_2 [T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP
           domain) Sme Sinorhizobium meliloti
          Length = 289

 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 71/111 (63%), Gaps = 3/111 (2%)

Query: 225 FGEYVAPELVAEMAANPASYNMEGESRELTVMFSDVRGFTTISEGLQPNELREYINAYLT 284
           FG+Y++P L+  +     +  + G+ RELT+MF DVR FT ISE L P E+  ++N  L 
Sbjct: 1   FGQYLSPSLLYRIEHTQDALRLGGDDRELTIMFVDVRNFTEISERLTPGEVVRFLNTLLD 60

Query: 285 AMSEDIRGNRGTLDKYIGDAVMAFWGAPIELPDH---AARALLAKXRARAR 332
           A+S  +  N GTLDK+IGD++MAFW AP+++ DH   A RA LA     AR
Sbjct: 61  ALSRHVIANEGTLDKFIGDSIMAFWNAPVDVADHPGKAVRAALAMRETLAR 111


>sll0646_2 [T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP
           domain) Syn Synechocystis
          Length = 343

 Score = 87.4 bits (215), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 63/99 (63%)

Query: 225 FGEYVAPELVAEMAANPASYNMEGESRELTVMFSDVRGFTTISEGLQPNELREYINAYLT 284
           FG Y+  ++VA +  NP    M G+ R +T++ SD+RGFT+ SEGL P E+ + +N Y  
Sbjct: 1   FGRYLTDQVVATLLENPEGLKMGGDRRPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFG 60

Query: 285 AMSEDIRGNRGTLDKYIGDAVMAFWGAPIELPDHAARAL 323
            M++ I  + GT+D+++GD ++  +GAP    D A RA+
Sbjct: 61  KMADVITHHGGTIDEFMGDGILVLFGAPTSQQDDALRAV 99


>all1118_2 [T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP
           domain) Nos Nostoc sp. PCC 7120
          Length = 322

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 65/99 (65%)

Query: 225 FGEYVAPELVAEMAANPASYNMEGESRELTVMFSDVRGFTTISEGLQPNELREYINAYLT 284
            G Y+  E++A +   P+   + GE R++T++FSD+RGF+ +SE L P ++ + +N YL 
Sbjct: 1   LGRYLTDEVLANILETPSGLKLGGERRKVTLLFSDLRGFSAMSEQLSPEQVVQILNLYLG 60

Query: 285 AMSEDIRGNRGTLDKYIGDAVMAFWGAPIELPDHAARAL 323
            M++ I   +GT++++IGD +   +GAPI  PD + RA+
Sbjct: 61  VMTDVINQYKGTINEFIGDGIFIMFGAPICRPDDSQRAI 99


>all1904_3 [T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP
           domain) Nos Nostoc sp. PCC 7120
          Length = 296

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 67/105 (63%), Gaps = 1/105 (0%)

Query: 228 YVAPELVAEMAANPASYNMEGESRELTVMFSDVRGFTTISEGLQPNELREYINAYLTAMS 287
           Y+  EL  E+     +  + G+ +E++++FSD+RG+TT++E L+  E+   +N Y  +M 
Sbjct: 12  YMTQELAEELLKLDDA-KLGGDRKEVSILFSDIRGYTTLTENLEAEEVVSMLNEYFESMV 70

Query: 288 EDIRGNRGTLDKYIGDAVMAFWGAPIELPDHAARALLAKXRARAR 332
           E +  ++GTLDKYIGDA+MA +G+P+ L +HA  A+      R R
Sbjct: 71  EAVFKHKGTLDKYIGDAIMAVFGSPLPLEEHAWMAVKTSIEMRHR 115