BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0223.p         (225 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ZyiaT [M] COG3713 Outer membrane protein V EcZ Escherichia coli ...    75   1e-13
ECs4460 [M] COG3713 Outer membrane protein V Ecs Escherichia col...    75   1e-13
yiaT [M] COG3713 Outer membrane protein V Eco Escherichia coli K12     75   2e-13

>ZyiaT [M] COG3713 Outer membrane protein V EcZ Escherichia coli O157:H7
           EDL933
          Length = 246

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 17/162 (10%)

Query: 47  GIGLGAGFERSPYRGYGTKTSALPILLYNGAYFRVAGPAVDFKLGSAGRFDFTLRAKYAN 106
            IG GA +  SPYRGY   T A+P++ Y G  F V    + F L  + + + +L A +  
Sbjct: 25  SIGAGAAYNESPYRGYNENTKAIPLISYEGDSFYVRQTTLGFILSQSEKNELSLTASWMP 84

Query: 107 EGYESGDAP--ILNGMDERKDSFRLGGTA--------TWRAPFAKFTLEWLKAAGNSNGQ 156
             ++  D     +  +D+R DS  + G A        T +A  A   L+      NSNG 
Sbjct: 85  LEFDPADNDDYAMQQLDKR-DSTAMAGVAWYHHERWGTVKASAAADVLD------NSNGW 137

Query: 157 TVKLGAERGFTAGRVRLTPHLGVTWMNNQYVNYYYGVKSSEA 198
             +L        GR+ LTP LGV + +  + +YYYG+  SE+
Sbjct: 138 VGELSVFHKMQIGRLSLTPALGVLYYDENFSDYYYGISESES 179


>ECs4460 [M] COG3713 Outer membrane protein V Ecs Escherichia coli O157:H7
          Length = 246

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 17/162 (10%)

Query: 47  GIGLGAGFERSPYRGYGTKTSALPILLYNGAYFRVAGPAVDFKLGSAGRFDFTLRAKYAN 106
            IG GA +  SPYRGY   T A+P++ Y G  F V    + F L  + + + +L A +  
Sbjct: 25  SIGAGAAYNESPYRGYNENTKAIPLISYEGDSFYVRQTTLGFILSQSEKNELSLTASWMP 84

Query: 107 EGYESGDAP--ILNGMDERKDSFRLGGTA--------TWRAPFAKFTLEWLKAAGNSNGQ 156
             ++  D     +  +D+R DS  + G A        T +A  A   L+      NSNG 
Sbjct: 85  LEFDPADNDDYAMQQLDKR-DSTAMAGVAWYHHERWGTVKASAAADVLD------NSNGW 137

Query: 157 TVKLGAERGFTAGRVRLTPHLGVTWMNNQYVNYYYGVKSSEA 198
             +L        GR+ LTP LGV + +  + +YYYG+  SE+
Sbjct: 138 VGELSVFHKMQIGRLSLTPALGVLYYDENFSDYYYGISESES 179


>yiaT [M] COG3713 Outer membrane protein V Eco Escherichia coli K12
          Length = 246

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 17/162 (10%)

Query: 47  GIGLGAGFERSPYRGYGTKTSALPILLYNGAYFRVAGPAVDFKLGSAGRFDFTLRAKYAN 106
            IG GA +  SPYRGY   T A+P++ Y G  F V    + F L  + + + +L A +  
Sbjct: 25  SIGAGAAYNESPYRGYNENTKAIPLISYEGDTFYVRQTTLGFILSQSEKNELSLTASWMP 84

Query: 107 EGYE--SGDAPILNGMDERKDSFRLGGTA--------TWRAPFAKFTLEWLKAAGNSNGQ 156
             ++    D   +  +D+R DS  + G A        T +A  A   L+      NSNG 
Sbjct: 85  LEFDPTDNDDYAMQQLDKR-DSTAMAGVAWYHHERWGTVKASAAADVLD------NSNGW 137

Query: 157 TVKLGAERGFTAGRVRLTPHLGVTWMNNQYVNYYYGVKSSEA 198
             +L        GR+ LTP LGV + +  + +YYYG+  SE+
Sbjct: 138 VGELSVFHKMQIGRLSLTPALGVLYYDENFSDYYYGISESES 179