BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0212.p (302 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1380 [K] COG2207 AraC-type DNA-binding domain-containing prote... 395 e-110 PA2276 [K] COG2207 AraC-type DNA-binding domain-containing prote... 263 5e-70 yqhC [K] COG2207 AraC-type DNA-binding domain-containing protein... 244 2e-64 ZyqhC [K] COG2207 AraC-type DNA-binding domain-containing protei... 244 2e-64 ECs3895 [K] COG2207 AraC-type DNA-binding domain-containing prot... 244 2e-64 >PA1380 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 321 Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/303 (63%), Positives = 235/303 (77%), Gaps = 1/303 (0%) Query: 1 MVELLAALTPLEGYNLSPLADVRFLRSNRPLKRMPVLYEPGIVIVAQGRKRGYLGSEVYL 60 MV LL L P EGYNL+ L VR LRS+RPL R PVLY+PGIVIV QGRKRGY G ++YL Sbjct: 19 MVALLENLAPQEGYNLTGLDCVRLLRSDRPLARTPVLYDPGIVIVCQGRKRGYFGEQIYL 78 Query: 61 YDAQHYLAVSVPVPFSMETDASEKEPMLAIYLRLDFKVAAELMMQIDDCVGPSAAK-PRG 119 YD QHYLAV+VPVPF+METDA+ + P+LAIYL LDF +AA L ++ID + + PR Sbjct: 79 YDEQHYLAVAVPVPFTMETDATPERPLLAIYLHLDFPLAAGLAVEIDRQRALAQVEAPRS 138 Query: 120 MVSTPMETELGISVLRFLEAMNDPLEAEVLGPSLRREIYFRVLTGQQGGTMRAALTMQGQ 179 ++S+PM+ L SVLRFLEA+ DPLE +L P+L RE+YFRVLTG QGG MRAAL M+G+ Sbjct: 139 LMSSPMDAPLRASVLRFLEALGDPLETAILAPALLRELYFRVLTGPQGGAMRAALAMRGR 198 Query: 180 FGKISRAISMIHRSYDEALGIDQLAKEAGMSVPTFHAHFKTVTDTSPLQYLKSTRLHQAR 239 FG I+RA+ IH Y E L + QLA EAGMSVP+FH+HFK +T TSP+QYLK TRLHQAR Sbjct: 199 FGNIARALRRIHAQYAEPLELAQLAGEAGMSVPSFHSHFKAITQTSPMQYLKCTRLHQAR 258 Query: 240 LLMLRNGMTAGAACAQVGYESASQFSREFKRLFGRTPVEEVDRMRKSFALPPHEDGAQFV 299 LLM+R GM+A AAC VGY SASQF+REFKRLFGR+P+ E R+R F+LPP + A++V Sbjct: 259 LLMVRQGMSAQAACHAVGYASASQFNREFKRLFGRSPLAEARRLRAGFSLPPAQGEAEYV 318 Query: 300 SSH 302 SSH Sbjct: 319 SSH 321 >PA2276 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 296 Score = 263 bits (671), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 136/293 (46%), Positives = 185/293 (63%), Gaps = 12/293 (4%) Query: 1 MVELLAALTPLEGYNLSPLADVRFLRSNRPLKRMPVLYEPGIVIVAQGRKRGYLGSEVYL 60 M L+A L G++ + + VR +R+ + R PV YEP I I+AQG+K G+LG E Y Sbjct: 8 MASLIATLQDEPGFDATRIPGVRLMRAEQAYPRSPVFYEPRICILAQGQKIGFLGGETYR 67 Query: 61 YDAQHYLAVSVPVPFSMETDASEKEPMLAIYLRLDFKVAAELMMQIDDCVG--------P 112 YDA+ YL +SVP+PF ET AS EP+L + + +D EL++Q+++ G P Sbjct: 68 YDAERYLVMSVPLPFECETHASAAEPLLGVSVDVDIGTLKELLLQMEEAPGSDDDNELAP 127 Query: 113 SAAKPRGMVSTPMETELGISVLRFLEAMNDPLEAEVLGPSLRREIYFRVLTGQQGGTMRA 172 SA M S P++ + +V+R L + PL++ +LGP L REI FR L +QG +RA Sbjct: 128 SAP----MASVPLDAGMADAVMRLLGCLQSPLDSHILGPQLVREIIFRALRSEQGNALRA 183 Query: 173 ALTMQGQFGKISRAISMIHRSYDEALGIDQLAKEAGMSVPTFHAHFKTVTDTSPLQYLKS 232 +G+++RA+ IH Y AL ID LA+EA MSV TFH +FK +T TSPLQYLKS Sbjct: 184 VAGRHSGYGRMARALRRIHTDYASALDIDTLAREANMSVSTFHHNFKAMTFTSPLQYLKS 243 Query: 233 TRLHQARLLMLRNGMTAGAACAQVGYESASQFSREFKRLFGRTPVEEVDRMRK 285 RL++A LM+++G+ A A QVGYES SQFSREFKR FGRTP EEV R+ Sbjct: 244 VRLYKAWSLMVQDGLNASTAANQVGYESPSQFSREFKRYFGRTPSEEVQAARR 296 >yqhC [K] COG2207 AraC-type DNA-binding domain-containing proteins Eco Escherichia coli K12 Length = 375 Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 128/268 (47%), Positives = 169/268 (63%), Gaps = 3/268 (1%) Query: 19 LADVRFLRSNRPLKRMPVLYEPGIVIVAQGRKRGYLGSEVYLYDAQHYLAVSVPVPFSME 78 L DVR L P R PV+YEPGI+I+ G K GY+ V+ YDA YL ++VP+PF E Sbjct: 104 LPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECE 163 Query: 79 TDASEKEPMLAIYLRLDFKVAAELMMQI--DDCVGPSAAKPRGMVSTPMETELGISVLRF 136 T A+ + P+ + L +D EL+M I D+ PS A G+ S + E+ + R Sbjct: 164 TYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSMAAS-GINSATLSEEILCAAERL 222 Query: 137 LEAMNDPLEAEVLGPSLRREIYFRVLTGQQGGTMRAALTMQGQFGKISRAISMIHRSYDE 196 L+ M PL+A +LG + REI + VLTG GG + A ++ Q F ISR + I Y E Sbjct: 223 LDVMERPLDARILGKQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTE 282 Query: 197 ALGIDQLAKEAGMSVPTFHAHFKTVTDTSPLQYLKSTRLHQARLLMLRNGMTAGAACAQV 256 L ++QLA EA MSV FH +FK+VT TSPLQYLK+ RLH+AR++++ +GM A AA +V Sbjct: 283 NLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRV 342 Query: 257 GYESASQFSREFKRLFGRTPVEEVDRMR 284 GYESASQFSREFKR FG TP E+ RMR Sbjct: 343 GYESASQFSREFKRYFGVTPGEDAARMR 370 >ZyqhC [K] COG2207 AraC-type DNA-binding domain-containing proteins EcZ Escherichia coli O157:H7 EDL933 Length = 375 Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 128/268 (47%), Positives = 169/268 (63%), Gaps = 3/268 (1%) Query: 19 LADVRFLRSNRPLKRMPVLYEPGIVIVAQGRKRGYLGSEVYLYDAQHYLAVSVPVPFSME 78 L DVR L P R PV+YEPGI+I+ G K GY+ V+ YDA YL ++VP+PF E Sbjct: 104 LPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECE 163 Query: 79 TDASEKEPMLAIYLRLDFKVAAELMMQI--DDCVGPSAAKPRGMVSTPMETELGISVLRF 136 T A+ + P+ + L +D EL+M I D+ PS A G+ S + E+ + R Sbjct: 164 TYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSMAAS-GINSATLSEEILCAAERL 222 Query: 137 LEAMNDPLEAEVLGPSLRREIYFRVLTGQQGGTMRAALTMQGQFGKISRAISMIHRSYDE 196 L+ M PL+A +LG + REI + VLTG GG + A ++ Q F ISR + I Y E Sbjct: 223 LDVMARPLDARILGKQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTE 282 Query: 197 ALGIDQLAKEAGMSVPTFHAHFKTVTDTSPLQYLKSTRLHQARLLMLRNGMTAGAACAQV 256 L ++QLA EA MSV FH +FK+VT TSPLQYLK+ RLH+AR++++ +GM A AA +V Sbjct: 283 NLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRV 342 Query: 257 GYESASQFSREFKRLFGRTPVEEVDRMR 284 GYESASQFSREFKR FG TP E+ RMR Sbjct: 343 GYESASQFSREFKRYFGVTPGEDAARMR 370 >ECs3895 [K] COG2207 AraC-type DNA-binding domain-containing proteins Ecs Escherichia coli O157:H7 Length = 375 Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 128/268 (47%), Positives = 169/268 (63%), Gaps = 3/268 (1%) Query: 19 LADVRFLRSNRPLKRMPVLYEPGIVIVAQGRKRGYLGSEVYLYDAQHYLAVSVPVPFSME 78 L DVR L P R PV+YEPGI+I+ G K GY+ V+ YDA YL ++VP+PF E Sbjct: 104 LPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECE 163 Query: 79 TDASEKEPMLAIYLRLDFKVAAELMMQI--DDCVGPSAAKPRGMVSTPMETELGISVLRF 136 T A+ + P+ + L +D EL+M I D+ PS A G+ S + E+ + R Sbjct: 164 TYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSMAAS-GINSATLSEEILCAAERL 222 Query: 137 LEAMNDPLEAEVLGPSLRREIYFRVLTGQQGGTMRAALTMQGQFGKISRAISMIHRSYDE 196 L+ M PL+A +LG + REI + VLTG GG + A ++ Q F ISR + I Y E Sbjct: 223 LDVMARPLDARILGKQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTE 282 Query: 197 ALGIDQLAKEAGMSVPTFHAHFKTVTDTSPLQYLKSTRLHQARLLMLRNGMTAGAACAQV 256 L ++QLA EA MSV FH +FK+VT TSPLQYLK+ RLH+AR++++ +GM A AA +V Sbjct: 283 NLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRV 342 Query: 257 GYESASQFSREFKRLFGRTPVEEVDRMR 284 GYESASQFSREFKR FG TP E+ RMR Sbjct: 343 GYESASQFSREFKRYFGVTPGEDAARMR 370