BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0205.p (293 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl0907 [E] COG0559 Branched-chain amino acid ABC-type transport... 222 9e-58 mll0760 Non COG 221 1e-57 SMb20604 [E] COG0559 Branched-chain amino acid ABC-type transpor... 207 2e-53 BH0250 [E] COG0559 Branched-chain amino acid ABC-type transport ... 207 2e-53 RSc2040 [E] COG0559 Branched-chain amino acid ABC-type transport... 203 3e-52 >Cgl0907 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Cgl Corynebacterium glutamicum Length = 294 Score = 222 bits (565), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 128/288 (44%), Positives = 178/288 (61%), Gaps = 6/288 (2%) Query: 6 GLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPSLQPFYFF 65 GLSV VLLL+A+GL++ FGQMGVINMAHGEF+ +GAY Y++ + + SL Sbjct: 11 GLSVGSVLLLVAVGLSLTFGQMGVINMAHGEFIMVGAYTAYVVQLVVGSAGLSL-----L 65 Query: 66 GAVVLSFIVAYGFGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKEVSATL 125 ++ L+FI+ FG L E L+ LY RPLDTLLAT+G+ L +QQ R+IFGA V Sbjct: 66 ISIPLAFIIGGLFGVLLEQFLLKYLYHRPLDTLLATFGVGLILQQLARNIFGAPAVDVRA 125 Query: 126 PDWLLGSFKPTENIDIPINGLFMMVLTLLLTGTIFILLFRSRWGLQVRATMQNRVMSGAV 185 P++L G+ + + +P LF++ L + + + L R+ WG ++RA + NR ++ Sbjct: 126 PEFLRGNVE-VLGVLVPTARLFILALAIASVTALAVFLNRTAWGRRIRAVVLNRDLAETA 184 Query: 186 GINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQSLIGTI 245 GI+TR DR TF +G G+AG+AG A T IG+TGPT G YIVD FLVV GG + G + Sbjct: 185 GIDTRATDRMTFFVGSGLAGIAGVAITLIGATGPTIGQNYIVDAFLVVAAGGIGRVKGAV 244 Query: 246 ASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVRVRK 293 AF + TQ+ E+ S+AK + L AV+ L RPQGLF + R Sbjct: 245 IMAFVLGITQAFVEYTTGASIAKFIVLIAVVAFLQFRPQGLFQTQTRS 292 >mll0760 Non COG Length = 317 Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 126/287 (43%), Positives = 178/287 (62%), Gaps = 1/287 (0%) Query: 6 GLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPSLQPFYFF 65 G+S+ VLLL A+GLAI FG MGVINMAHGE + +GAY T+++ + T P L + Sbjct: 28 GISLGSVLLLAAIGLAITFGVMGVINMAHGEMVMLGAYTTFVVQQVIRTSFPGLFDWSLV 87 Query: 66 GAVVLSFIVAYGFGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKEVSATL 125 A+ L+F+VA G E +I LY RPL+TLLATWG+SL +QQ RSIFG Sbjct: 88 IALPLAFLVAALVGLAIERGVIRFLYGRPLETLLATWGVSLILQQAVRSIFGPTNQEVGN 147 Query: 126 PDWLLGSFKPTENIDIPINGLFMMVLTLLLTGTIFILLFRSRWGLQVRATMQNRVMSGAV 185 P W+ GSF + + I N L+++V L + G + ++ R+ WGLQ+RA NR M+ ++ Sbjct: 148 PSWMSGSFDIGQ-LAITWNRLWILVFALTVFGVLLYVMKRTPWGLQMRAVTANRRMAASM 206 Query: 186 GINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQSLIGTI 245 GI T VD TFALG G+AG+AG A + I + P G YI+D+F+VVVFGG +L GT+ Sbjct: 207 GIRTPWVDALTFALGSGIAGIAGVALSQIDNVSPNLGRGYIIDSFMVVVFGGVGNLWGTL 266 Query: 246 ASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVRVR 292 AFS+ E + + K++ L +IL + RP+GLF+++ R Sbjct: 267 VGAFSLGIVNKFLEPYAGAVLGKIVVLVLIILFIQKRPRGLFALKGR 313 >SMb20604 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Sme Sinorhizobium meliloti Length = 537 Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 119/276 (43%), Positives = 169/276 (61%), Gaps = 1/276 (0%) Query: 17 ALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPSLQPFYFFGAVVLSFIVAY 76 A+GLAI FG MG+INMAHGE + +GAY T+L+ + T P L + A+ L+F+V Sbjct: 259 AIGLAITFGVMGIINMAHGEMVMLGAYTTFLVQDVVRTSFPHLFEWSLAIALPLAFLVTG 318 Query: 77 GFGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKEVSATLPDWLLGSFKPT 136 G E +I LY RPL+TLLATWG+SL +QQT R+IFG P W+ G+F+ Sbjct: 319 AVGLALERGVIRFLYGRPLETLLATWGISLILQQTVRTIFGPTNREVGNPSWMSGAFE-L 377 Query: 137 ENIDIPINGLFMMVLTLLLTGTIFILLFRSRWGLQVRATMQNRVMSGAVGINTRKVDRTT 196 + I N L+++V L + + LL ++ GLQ+RA QNR M+ ++GI T VD T Sbjct: 378 GGLAITWNRLWIIVFALAVFAALLFLLKKTPMGLQMRAVTQNRRMASSMGIRTPWVDALT 437 Query: 197 FALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQSLIGTIASAFSIAQTQS 256 FALG G+AG+AG A + I + P G YI+D+F+VVVFGG +L GT+ AFS+ Sbjct: 438 FALGSGIAGIAGVALSQIDNVSPNLGQGYIIDSFMVVVFGGVGNLWGTLVGAFSLGILNK 497 Query: 257 TAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVRVR 292 E + + K+L L +IL + RP+GLF+++ R Sbjct: 498 FLEPYAGAVLGKILVLVLIILFIQKRPRGLFALKGR 533 >BH0250 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Bha Bacillus halodurans Length = 297 Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 138/294 (46%), Positives = 188/294 (63%), Gaps = 2/294 (0%) Query: 1 MQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPSLQ 60 +Q FNG+S+ +LLL+ALGLAI FG M VINMAHGE + +GAY TY++ L + Y P Sbjct: 3 VQLFNGISLGSILLLIALGLAITFGMMRVINMAHGELIMVGAYATYVVQLLFSQYVPPAY 62 Query: 61 -PFYFFGAVVLSFIVAYGFGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAK 119 YF AV LSF+++ G L EL +I LY RPLD+LLAT+G+ L +QQT R+IFGA Sbjct: 63 FDLYFLLAVPLSFVISALIGILIELTVIRHLYGRPLDSLLATFGVGLILQQTARTIFGAP 122 Query: 120 EVSATLPDWLLGSFKPTENIDIPINGLFMMVLTLLLTGTIFILLFRSRWGLQVRATMQNR 179 V P +L G + + +P + LF++ L L+ + +++R G ++R MQNR Sbjct: 123 NVGVQSPSFLRGGLE-IAGVTLPFSRLFIITLVLVSFCLLAWFFYKTRNGRKIRGVMQNR 181 Query: 180 VMSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQ 239 M+ +GI+TRKVD TFA+G G AG+AGAA T +G GPT G+ YIVD F+VVV GG Sbjct: 182 SMATCLGISTRKVDVMTFAIGSGCAGLAGAALTLLGPIGPTIGTYYIVDAFMVVVVGGVG 241 Query: 240 SLIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVRVRK 293 L+GT+A A I + E++ S+ KVL + +IL L RPQGLFS+ R Sbjct: 242 MLVGTVAGALGIGMFNTLFEYWTNASLGKVLVFACIILFLQWRPQGLFSLPTRS 295 >RSc2040 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Rso Ralstonia solanacearum Length = 538 Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 113/271 (41%), Positives = 162/271 (59%) Query: 22 IIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPSLQPFYFFGAVVLSFIVAYGFGYL 81 I +G +GVINMAHGEFL IGAY TY++ L + P+ +Y A+ +F+ A G++ Sbjct: 264 ITYGLIGVINMAHGEFLMIGAYATYVVQTLFRNHFPAAFDWYLPAALPAAFLAAAVVGFV 323 Query: 82 TELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKEVSATLPDWLLGSFKPTENIDI 141 E +++ LY RPL+TLLAT+G+SL + Q RS+FGA+ V P W+ G + + Sbjct: 324 LERMVLRHLYGRPLETLLATFGVSLLLMQAVRSVFGAQNVEVANPSWMSGGIALYPGLIL 383 Query: 142 PINGLFMMVLTLLLTGTIFILLFRSRWGLQVRATMQNRVMSGAVGINTRKVDRTTFALGC 201 P N L ++ L++ + +L R+R GL VRAT QNR M+ VG+ T KVD FA G Sbjct: 384 PYNRLVILAFALVVVTLAWAVLNRTRLGLFVRATTQNRAMAACVGVRTWKVDSYAFAFGA 443 Query: 202 GVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFF 261 G+AG+ G A + IG+ GP G YI+D+F+ VV GG L GTI AF + E F Sbjct: 444 GIAGLGGCALSQIGNVGPDLGQGYIIDSFMAVVLGGVGQLAGTIVGAFGLGLINKCIEPF 503 Query: 262 LTGSMAKVLTLSAVILILMLRPQGLFSVRVR 292 +AK+ L ++L + RPQGLF+++ R Sbjct: 504 YGAVLAKIFVLVLIVLFIQKRPQGLFALKGR 534