BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0201.p (1030 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20609_1 Non COG 689 0.0 AGc4388_1 Non COG 681 0.0 MT3561 Non COG 415 e-115 Rv3454 Non COG 309 2e-83 AGc4388_2 [T] COG0642 Signal transduction histidine kinase Atu A... 273 1e-72 >SMb20609_1 Non COG Length = 675 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/685 (51%), Positives = 473/685 (69%), Gaps = 21/685 (3%) Query: 7 QRIVKVRRDYNTWVANETLEDYALRYTPRSFRRWSEFRLANTALGATSFLALEAISGAIT 66 QRI+ VRR+YN WVAN+TLEDYALR+T +S RR+S R++ TA+GA SFLALEAI GAIT Sbjct: 5 QRIIPVRREYNRWVANQTLEDYALRFTAKSARRFSSARISQTAIGAISFLALEAIGGAIT 64 Query: 67 LSYGFTNTFWAIACVVVLFFLTGLPISYYAARYGVDMDLLTRGAGFGYIGSTVTSLIYAS 126 +SYG TN AI ++ + GLPIS YA R+GVD+DLLTRGA FGYIGST+TSLIYAS Sbjct: 65 MSYGTTNAIVAILVASLMILIVGLPISRYAIRHGVDIDLLTRGASFGYIGSTITSLIYAS 124 Query: 127 FTFIFFALEAAIMAQAIEIYFGLPLVYGYVLCSLIVIPMVAYGITLINRLQMWTQPLWIV 186 FTFI FA+EA+IM+ A+E+ G+PL GY++ +++VIP+V +G+ LI+R Q+ TQP WIV Sbjct: 125 FTFILFAIEASIMSGALELALGIPLWIGYIVSAVMVIPLVTHGVKLISRFQLVTQPFWIV 184 Query: 187 LLTLPYICVLYKEPDALTNLITFSGRAEEGG------SFNIYLFGAAATVAFSLIAQIGE 240 L LP+ + + + + + + ++G G SF++ FGAA+ V F+L AQIGE Sbjct: 185 LNVLPFAFIAFADWEKVGLWLAYAGIHHTSGPPGTLASFHLVEFGAASAVIFALTAQIGE 244 Query: 241 QVDFLRFLPEKTQANRGRWWTALLLAGPGWILLGGAKMLGGALLAFLAVQHEVPMGKAVE 300 QVDFLRFLP + + R A+ LAG GW+++G K+L G+ L LA+ VP +A + Sbjct: 245 QVDFLRFLPPDGE-RKLRHRIAVFLAGSGWVIVGAPKLLAGSFLVVLALSTGVPSTRAAD 303 Query: 301 PTQMYLIGYQYVFSNPALVLAAVALFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGR 360 P QMY + Y+F + L +A FVVVSQ+KINV NAYAGSLAWSNFF+RLTHSHPGR Sbjct: 304 PAQMYYTAFGYIFPSDTAALLLMAAFVVVSQLKINVMNAYAGSLAWSNFFSRLTHSHPGR 363 Query: 361 VVWLVFNVLIAVLLMELGVFNALEHVLALYSLVAISWIGAVVSDLVINKPLKLSPAHIEF 420 V+WLVFNV IA+LLMELG++ LE L ++S+VA++W+ + +DL +NKPL L+P IEF Sbjct: 364 VIWLVFNVAIALLLMELGIYRLLEETLGIFSIVAMAWLSTISADLFVNKPLGLAPPGIEF 423 Query: 421 KRAHLYDINPVGVGSMAIASILSAIAMSGVLGKLAAAMSPFIALGTAMLMAPLIAIATRS 480 KRAHLYDINPVG+G+M ++++ + +A G G++AA+++P+IAL TA +++PLIA T Sbjct: 424 KRAHLYDINPVGLGTMGVSTLFALVAHFGAAGEIAASLAPYIALVTAFVVSPLIAWWTEG 483 Query: 481 RYYIARKDTLPEHLHTGKNSDHQHAALECVICGNQFEMPDMAHCPAYQGAICSLCCSLDA 540 ++Y+ARK + S + + C IC + FE DMA CPAY ICSLCCSLD+ Sbjct: 484 KFYLARKP---------RKSWLAESEITCSICEHPFEPEDMAWCPAYAAPICSLCCSLDS 534 Query: 541 RCNDRCKTPAARLPNQVFSTLQALLPSRFTLKLNTRIGHYLIVFGLLSGGLAVVLWMLYF 600 RC+D CK P ARL QV + +A+LP KL TR+G Y I + G+ V+L M+ Sbjct: 535 RCHDMCK-PKARLNTQVATVAKAVLPETVVAKLATRLGRYAISAVISITGIGVILAMIAH 593 Query: 601 QQMAGISGLTPSGPDSIQSIFIKLFCTLLVLIGVGSWWLILTNESRSVAHEESERQTNLL 660 Q A +P + ++ +F +L GV SW+ +L ++SR VA EES RQ L Sbjct: 594 QTTAA----SPETAEVVERTIAIVFFVFAILAGVVSWFYVLAHDSRVVAEEESSRQNTAL 649 Query: 661 LQEIEAHKQTDAELQRAKEAAESAN 685 L+EI AHK+TDA LQ AKE AESAN Sbjct: 650 LKEIAAHKKTDAALQDAKERAESAN 674 >AGc4388_1 Non COG Length = 675 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/685 (50%), Positives = 470/685 (68%), Gaps = 21/685 (3%) Query: 7 QRIVKVRRDYNTWVANETLEDYALRYTPRSFRRWSEFRLANTALGATSFLALEAISGAIT 66 QRI+ VRR+YN WVAN+TLEDYALR+T +S R++S R+++TA+GA SFLALEAI GAIT Sbjct: 5 QRIIPVRREYNRWVANQTLEDYALRFTAKSARQFSSNRISHTAIGAISFLALEAIGGAIT 64 Query: 67 LSYGFTNTFWAIACVVVLFFLTGLPISYYAARYGVDMDLLTRGAGFGYIGSTVTSLIYAS 126 LSYG TN F+AI + GLPIS YA R+GVD+DLLTRGA FGYIGST+TSLIYA+ Sbjct: 65 LSYGTTNAFYAIIVAAIAMLAVGLPISRYAIRHGVDIDLLTRGASFGYIGSTITSLIYAA 124 Query: 127 FTFIFFALEAAIMAQAIEIYFGLPLVYGYVLCSLIVIPMVAYGITLINRLQMWTQPLWIV 186 FTF+ FA+EA+IM+ A+E+ G+PL GY++ +++VIP+V +G+ LI+R Q+ TQP WIV Sbjct: 125 FTFMLFAIEASIMSGALELALGIPLWIGYIISAVMVIPLVTHGVRLISRFQIITQPFWIV 184 Query: 187 LLTLPYICVLYKEPDALTNLITFSGRAEEGG------SFNIYLFGAAATVAFSLIAQIGE 240 L LP+I + + + FSG G FN+ FGAA+ V +L++QIGE Sbjct: 185 LNILPFIFIALMDWEKYDLWRAFSGIHHASGPPGTVADFNLVEFGAASAVILALMSQIGE 244 Query: 241 QVDFLRFLPEKTQANRGRWWTALLLAGPGWILLGGAKMLGGALLAFLAVQHEVPMGKAVE 300 QVDFLRFLP + Q +R R A+ LAG GW+++G K+L G+ L L V + +A + Sbjct: 245 QVDFLRFLPAEGQ-SRVRHRIAVFLAGAGWVVVGVPKLLAGSFLVVLTFSSGVSVDRAAD 303 Query: 301 PTQMYLIGYQYVFSNPALVLAAVALFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGR 360 P QMYL + Y+ N + + FVVVSQ+KINV NAYAGSLAWSNFF+RLTHSHPGR Sbjct: 304 PAQMYLTAFGYMVPNETAAMLLMVAFVVVSQLKINVMNAYAGSLAWSNFFSRLTHSHPGR 363 Query: 361 VVWLVFNVLIAVLLMELGVFNALEHVLALYSLVAISWIGAVVSDLVINKPLKLSPAHIEF 420 VVWLVFNV IA+LLMELG++ LE L ++S++A++W+ + +DL INKPL L+P IEF Sbjct: 364 VVWLVFNVAIALLLMELGIYRLLEETLGIFSIIAMAWLCTISADLFINKPLGLAPPGIEF 423 Query: 421 KRAHLYDINPVGVGSMAIASILSAIAMSGVLGKLAAAMSPFIALGTAMLMAPLIAIATRS 480 KRAHLYDINPVGVGSMA+++ ++ +A G G LAA+++P++ L A + +P +A+AT+ Sbjct: 424 KRAHLYDINPVGVGSMALSATIALMAHFGTFGPLAASLAPYLTLIVAFIASPALALATKG 483 Query: 481 RYYIARKDTLPEHLHTGKNSDHQHAALECVICGNQFEMPDMAHCPAYQGAICSLCCSLDA 540 ++Y+ARK + H+ +++ C IC + FE DMA CPAY ICSLCCSLD+ Sbjct: 484 KFYLARKP---------RQKWHEESSITCSICEHPFEPEDMAWCPAYAAPICSLCCSLDS 534 Query: 541 RCNDRCKTPAARLPNQVFSTLQALLPSRFTLKLNTRIGHYLIVFGLLSGGLAVVLWMLYF 600 RC+D CK P A+L QV S + LP + KL TR+G Y + + + +L ++ Sbjct: 535 RCHDMCK-PKAKLNYQVASVAKTFLPRQLVAKLATRLGRYGMAAAIAVTAIGGILALIAH 593 Query: 601 QQMAGISGLTPSGPDSIQSIFIKLFCTLLVLIGVGSWWLILTNESRSVAHEESERQTNLL 660 Q + +P+ D + + +F V+ G+ W+L+L ++SR VA EES RQ LL Sbjct: 594 Q----VGTASPATADVVNRTILIVFFVFAVIAGIVCWFLVLAHDSRVVAEEESSRQNTLL 649 Query: 661 LQEIEAHKQTDAELQRAKEAAESAN 685 L+EI AHK+TDA LQ AKE AE+AN Sbjct: 650 LKEIAAHKKTDAALQDAKETAEAAN 674 >MT3561 Non COG Length = 562 Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust. Identities = 236/545 (43%), Positives = 336/545 (61%), Gaps = 20/545 (3%) Query: 23 ETLEDYALRYTPRSFRRWSEFRLANTALGATSFLALEAISGAITLSYGFTNTFWAIACVV 82 ETLEDY LR PRS+RRW + +ALG ++LA AI + +++G N IA Sbjct: 25 ETLEDYTLRLAPRSYRRWPPAVVGISALGGIAYLADFAIGANVGITWGTANALCGIAIFA 84 Query: 83 VLFFLTGLPISYYAARYGVDMDLLTRGAGFGYIGSTVTSLIYASFTFIFFALEAAIMAQA 142 ++ F+TGLP++YYAARY +D+DL+TRG+GFGY GS VT++I+A+FTFIFFALE +IMAQ Sbjct: 85 LVVFVTGLPLAYYAARYNIDLDLITRGSGFGYYGSVVTNVIFATFTFIFFALEGSIMAQG 144 Query: 143 IEIYFGLPLVYGYVLCSLIVIPMVAYGITLINRLQMWTQPLWIVLLTLPYICVLYKEPDA 202 +++ +PL GY +LI+ P+V YG+ ++++LQ+WT PLW++L+ P+ ++ PD+ Sbjct: 145 LKLGLHIPLWAGYACSTLIIFPLVVYGMKVLSQLQLWTTPLWLILMAAPFGYLVVSHPDS 204 Query: 203 LTNLITFSGRAEEGG-SFNIYLFGAAATVAFSLIAQIGEQVDFLRFLPEKTQANRGRWWT 261 + +++G+ GG SF L AA V SLIAQI EQ+D+LRF+P +T N RWWT Sbjct: 205 IGQFFSYAGKDGHGGLSFGSVLL--AAGVCLSLIAQIAEQIDYLRFMPPRTPENANRWWT 262 Query: 262 ALLLAGPGWILLGGAKMLGGALLAFLAVQHEVPMGKAV--EPTQMYLIGYQYVFSNPALV 319 LLAGPGW+ G K + G LA + + +P + +P ++ Y+ F L Sbjct: 263 WTLLAGPGWVAFGATKQIIGLFLA-VYLMANIPGSSTIANQPVHQFMQIYR-TFVPGWLA 320 Query: 320 LAAVALFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGRVVWLVFNVLIAVLLMELGV 379 L + VV+SQIKINVTNAY+GSLAW+N F RLT +PGRVV+L N+ IA++LME + Sbjct: 321 LTLAVILVVLSQIKINVTNAYSGSLAWTNSFTRLTKHYPGRVVFLGVNLAIALILMEANM 380 Query: 380 FNALEHVLALYSLVAISWIGAVVSDLVINKP-LKLSPAHIEFKRAHLYDINPVGVGSMAI 438 F+ L +L Y+ ++W+ AV SD+ NK L LSP EF+R LY INPVG GS+ + Sbjct: 381 FDFLNTILGCYANCGMAWVVAVASDIGFNKYLLGLSPKTPEFRRGMLYAINPVGFGSLLL 440 Query: 439 ASILSAIAMSGVLGKLAAAMSPFIALGTAMLMAPLIAIATRSRYYIARKD---TLPEHLH 495 A+ LS + G LG SP +A+ TA++M P++A AT+ +YY+ R LP + Sbjct: 441 AAGLSIVTFFGGLGAALQPYSPLVAIVTALVMPPILAAATKGKYYLRRTHDGIDLPMYDE 500 Query: 496 TGKNSDHQHAALECVICGNQFEMPDMAHCPAYQGAICSLCCSLDARCND------RCKTP 549 G S A L C +C FE PDM C + +CSLC S D + R P Sbjct: 501 HGNPSA---AVLTCHVCHQDFERPDMLACQTHGAHVCSLCLSTDKQAEHVLPGLARAHIP 557 Query: 550 AARLP 554 ++P Sbjct: 558 GDQVP 562 >Rv3454 Non COG Length = 422 Score = 309 bits (792), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 174/429 (40%), Positives = 251/429 (58%), Gaps = 20/429 (4%) Query: 139 MAQAIEIYFGLPLVYGYVLCSLIVIPMVAYGITLINRLQMWTQPLWIVLLTLPYICVLYK 198 MAQ +++ +PL GY +LI+ P+V YG+ ++++LQ+WT PLW++L+ P+ ++ Sbjct: 1 MAQGLKLGLHIPLWAGYACSTLIIFPLVVYGMKVLSQLQLWTTPLWLILMAAPFGYLVVS 60 Query: 199 EPDALTNLITFSGRAEEGG-SFNIYLFGAAATVAFSLIAQIGEQVDFLRFLPEKTQANRG 257 PD++ +++G+ GG SF L AA V SLIAQI EQ+D+LRF+P +T N Sbjct: 61 HPDSIGQFFSYAGKDGHGGLSFGSVLL--AAGVCLSLIAQIAEQIDYLRFMPPRTPENAN 118 Query: 258 RWWTALLLAGPGWILLGGAKMLGGALLAFLAVQHEVPMGKAV--EPTQMYLIGYQYVFSN 315 RWWT LLAGPGW+ G K + G LA + + +P + +P ++ Y+ F Sbjct: 119 RWWTWTLLAGPGWVAFGATKQIIGLFLA-VYLMANIPGSSTIANQPVHQFMQIYR-TFVP 176 Query: 316 PALVLAAVALFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGRVVWLVFNVLIAVLLM 375 L L + VV+SQIKINVTNAY+GSLAW+N F RLT +PGRVV+L N+ IA++LM Sbjct: 177 GWLALTLAVILVVLSQIKINVTNAYSGSLAWTNSFTRLTKHYPGRVVFLGVNLAIALILM 236 Query: 376 ELGVFNALEHVLALYSLVAISWIGAVVSDLVINKP-LKLSPAHIEFKRAHLYDINPVGVG 434 E +F+ L +L Y+ ++W+ AV SD+ NK L LSP EF+R LY INPVG G Sbjct: 237 EANMFDFLNTILGCYANCGMAWVVAVASDIGFNKYLLGLSPKTPEFRRGMLYAINPVGFG 296 Query: 435 SMAIASILSAIAMSGVLGKLAAAMSPFIALGTAMLMAPLIAIATRSRYYIARKD---TLP 491 S+ +A+ LS + G LG SP +A+ TA++M P++A AT+ +YY+ R LP Sbjct: 297 SLLLAAGLSIVTFFGGLGAALQPYSPLVAIVTALVMPPILAAATKGKYYLRRTHDGIDLP 356 Query: 492 EHLHTGKNSDHQHAALECVICGNQFEMPDMAHCPAYQGAICSLCCSLDARCND------R 545 + G S A L C +C FE PDM C + +CSLC S D + R Sbjct: 357 MYDEHGNPSA---AVLTCHVCHQDFERPDMLACQTHGAHVCSLCLSTDKQAEHVLPGLAR 413 Query: 546 CKTPAARLP 554 P ++P Sbjct: 414 AHIPGDQVP 422 >AGc4388_2 [T] COG0642 Signal transduction histidine kinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 246 Score = 273 bits (699), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 132/245 (53%), Positives = 176/245 (71%) Query: 687 AKSRFVTGMSHELRTPLNSILGYAQILHVDATIPPARKDAIAVIRRSGEHLLSLIDGLLD 746 AKSR+V G+SHELRTPLN++LGYAQIL D TIP R+ AI VIRRS +HL LIDGLLD Sbjct: 1 AKSRYVVGLSHELRTPLNAVLGYAQILERDETIPAPRQSAIKVIRRSADHLSGLIDGLLD 60 Query: 747 IAKIEAGKMRLASDELALWEFLEQIAGMFAPQAEQKGLSFRFEKTGRIPHIVHADQKRLR 806 I+KIEAG++++ S+E+ + +FL+Q+ MF PQA+ KGL FR E+T +P V D+KRLR Sbjct: 61 ISKIEAGRLQVYSNEINIKDFLDQVVDMFRPQAQAKGLEFRHERTAALPQYVRTDEKRLR 120 Query: 807 QILINLLGNAVKFTDSGSVTVRVRYLREIAYFDIIDTGIGIADDDLERIFLPFERSNAAN 866 QIL+NLL NA+KFTD GSVT V Y ++A F + DTG GIA+ DL RI+ PF+R A + Sbjct: 121 QILVNLLSNAIKFTDEGSVTFDVAYRSQVASFTVSDTGRGIAEKDLARIYEPFQRGEAES 180 Query: 867 LREDIGTGLGLAISSMLTHIMGGELAVKSKVGSGSSFHLKIYLPEVHVPRPRLKLEDQMS 926 +R G GLGL I+ +LT+ +GGE++V S+ +GS+F +++ L VH P E + Sbjct: 181 VRPMPGLGLGLTITRLLTNTLGGEISVSSEKDNGSTFRVRLMLSAVHRPSTAPAPEKTIR 240 Query: 927 GYIGP 931 Y GP Sbjct: 241 SYSGP 245