BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0199.p (341 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20610 [TK] COG0745 Response regulators consisting of a CheY-l... 235 1e-61 AGc4390 [TK] COG0745 Response regulators consisting of a CheY-li... 232 9e-61 all5308_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 138 2e-32 all0637_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 135 2e-31 all1177_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 127 3e-29 >SMb20610 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 309 Score = 235 bits (600), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 137/321 (42%), Positives = 185/321 (57%), Gaps = 26/321 (8%) Query: 8 RHVVLIVDDKPDNLAMLSDSLDESGHIVLVATDGISALERLDYITPDLILLDAMMPGIDG 67 R +VL+VDD P+ L L+++L++SG VL+AT G +AL D ITPD+ILLDA+MPG+DG Sbjct: 10 RDIVLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADRITPDIILLDAVMPGMDG 69 Query: 68 FETCKRIKLIKSVNHVPVVFMTGLTETEHVVRGFEVGGIDYVTKPIKPQEVVARIGAHIK 127 F+TC R+K SV VPVVFMTGLTETEHVVR E GG+DY+TKPI E+ ARI H+ Sbjct: 70 FDTCTRLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLS 129 Query: 128 TARMMSQARGMLEHAAHAVIVLSGNGLPLWQTSKASLWLEKYFPAGAGA-NATHKLPMML 186 AR AR L+ A ++ + G+G W T +A+ + A G+ + + + Sbjct: 130 NARSAQSARVALDAAGRHLLAVRGDGTVRWSTPQAT----RLVNAATGSDDGLAFVAGRI 185 Query: 187 QSWLNESLVRQRQGNGDIRPLVVTQGDCELRVALSAAGQGHEITLLLEEKNLAADIAASS 246 W+ E + G +Q ++ L A G + L E ++ D Sbjct: 186 AEWMRERENSPGERQGTFTLQRASQTGLQISY-LGAIGANEYLFRLTAENGMSDD----- 239 Query: 247 SIAAMRPTLGHDASANPPAGCFHLTPRESDVLAWLGKGKTNRDIAEILGMSPRTVNKHLE 306 TL F LT RES+VL W+ KGK+NRDI EILG+S RTV KHLE Sbjct: 240 ------ETLRQH---------FRLTQRESEVLLWIAKGKSNRDIGEILGLSARTVTKHLE 284 Query: 307 HIFVKLGVETRSAAAVLASSL 327 I+VKLGVE R++AAV A+ + Sbjct: 285 QIYVKLGVENRASAAVKATQV 305 >AGc4390 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 309 Score = 232 bits (592), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 138/320 (43%), Positives = 185/320 (57%), Gaps = 28/320 (8%) Query: 8 RHVVLIVDDKPDNLAMLSDSLDESGHIVLVATDGISALERLDYITPDLILLDAMMPGIDG 67 R +VL+VDD PD L L+D+L++SG L+AT G +AL + ITPD+ILLDA+MP +DG Sbjct: 10 RDIVLLVDDSPDALGFLTDALEQSGFSALIATSGQAALNIAERITPDIILLDAVMPVMDG 69 Query: 68 FETCKRIKLIKSVNHVPVVFMTGLTETEHVVRGFEVGGIDYVTKPIKPQEVVARIGAHIK 127 FETC+R+K +V VPV+FMTGLTETEHVVR E GG+DY+TKPI E+ ARI H+ Sbjct: 70 FETCRRLKANAAVAQVPVIFMTGLTETEHVVRALESGGVDYLTKPINIDELRARIRVHLS 129 Query: 128 TARMMSQARGMLEHAAHAVIVLSGNGLPLWQTSKASLWLEKYFPAGAGANATHKLPMM-L 186 AR AR L+ A ++ + NG W T +A+ + A G + ++ + + Sbjct: 130 NARSAQSARVALDAAGRHLLAVRANGAIHWSTPQAT----RLVNAATGRDDGLEIVVAHI 185 Query: 187 QSWLNESLVRQRQGNGDIRPLVVTQ-GDCELRVALSAAGQGHEITLLLEEKNLAADIAAS 245 WL E R PL +T+ G L+++ A E L N +D Sbjct: 186 SGWLKE---RATVDAARDAPLTITEAGRPALQLSFLGAMGPDEYLFRLTAANEKSDDHLL 242 Query: 246 SSIAAMRPTLGHDASANPPAGCFHLTPRESDVLAWLGKGKTNRDIAEILGMSPRTVNKHL 305 S F LT RES+VL W+ KGK+NRDI +ILG+S RTVNKHL Sbjct: 243 KS-------------------HFALTTRESEVLLWIAKGKSNRDIGDILGLSARTVNKHL 283 Query: 306 EHIFVKLGVETRSAAAVLAS 325 E I+VKLGVE R++AAV A+ Sbjct: 284 EQIYVKLGVENRASAAVKAA 303 >all5308_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 Length = 155 Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 62/121 (51%), Positives = 88/121 (72%) Query: 11 VLIVDDKPDNLAMLSDSLDESGHIVLVATDGISALERLDYITPDLILLDAMMPGIDGFET 70 VL+VDD P+NL +LS+++ G L+ATDG SALE+ +Y PDLILLD MMPGIDGFET Sbjct: 12 VLLVDDNPNNLKVLSEAVQGCGWKALMATDGESALEQTEYAHPDLILLDVMMPGIDGFET 71 Query: 71 CKRIKLIKSVNHVPVVFMTGLTETEHVVRGFEVGGIDYVTKPIKPQEVVARIGAHIKTAR 130 C+R+K + PV+FMT L++ V+G E+G +DY+TKP + +EV+AR+ H+K + Sbjct: 72 CRRLKANPITQNTPVIFMTALSDATDKVKGLEIGAVDYITKPFQHEEVIARLKLHLKISH 131 Query: 131 M 131 + Sbjct: 132 L 132 >all0637_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 Length = 175 Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 3/154 (1%) Query: 10 VVLIVDDKPDNLAMLSDSLDESGHIVLVATDGISALERLDYITPDLILLDAMMPGIDGFE 69 +VLIVDD P NL ++S++L ++G V +AT G AL++++ PDLILLD MMPGIDGFE Sbjct: 25 LVLIVDDTPTNLEVVSETLGDAGFDVAIATSGDRALQQVERRLPDLILLDVMMPGIDGFE 84 Query: 70 TCKRIKLIKSVNHVPVVFMTGLTETEHVVRGFEVGGIDYVTKPIKPQEVVARIGAHIKTA 129 TC+R+K H+P++FMT L ++E V+ E+G +DY+ KP +EV+AR+ H++ + Sbjct: 85 TCRRLKANDRTCHIPIIFMTALCDSESKVKALELGAVDYIVKPFYEKEVLARVSTHLQLS 144 Query: 130 RMMSQARGMLEHAAHAVIVLSGNGLPLWQTSKAS 163 ++ + + A L + L L Q K S Sbjct: 145 QL---TQNLAAQVAQKAAELEASQLQLIQNEKMS 175 >all1177_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 Length = 171 Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 59/130 (45%), Positives = 84/130 (64%) Query: 5 TFDRHVVLIVDDKPDNLAMLSDSLDESGHIVLVATDGISALERLDYITPDLILLDAMMPG 64 +F++ VLIVDD P NL +LSD++ G +L+ATDG SA+E +Y PD+ILLD MMP Sbjct: 6 SFEKATVLIVDDNPTNLKVLSDAISSLGWEILIATDGESAIEEAEYAQPDIILLDVMMPE 65 Query: 65 IDGFETCKRIKLIKSVNHVPVVFMTGLTETEHVVRGFEVGGIDYVTKPIKPQEVVARIGA 124 +DGF+TC +K S +PV+F+T LT+ V GG+DY+TKP EV+ RI Sbjct: 66 MDGFQTCAELKSKTSTKDIPVIFLTALTDQFDKVLALVTGGVDYITKPFNLDEVLVRIQV 125 Query: 125 HIKTARMMSQ 134 H+K + + + Sbjct: 126 HLKLSFLTKE 135