BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0195.p (269 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO4109 [E] COG0765 ABC-type amino acid transport system, permea... 293 3e-79 PA2202 [E] COG0765 ABC-type amino acid transport system, permeas... 240 3e-63 PA4193 [E] COG0765 ABC-type amino acid transport system, permeas... 154 2e-37 RSp0933 [E] COG0765 ABC-type amino acid transport system, permea... 153 4e-37 AGl1163 [E] COG0765 ABC-type amino acid transport system, permea... 146 4e-35 >YPO4109 [E] COG0765 ABC-type amino acid transport system, permease component Ype Yersinia pestis Length = 251 Score = 293 bits (749), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 142/252 (56%), Positives = 189/252 (75%), Gaps = 8/252 (3%) Query: 1 MEFAVLLDNLPYLLWGSYPDGPLGGAALTLLLSIGSALLSALLGVVFGVVLAMSSGAVRK 60 M+F +++DN YLLWG++PDGPLGGAALT+++SI + + SA+LG V GV LAMS G Sbjct: 1 MDFTIIVDNWRYLLWGTFPDGPLGGAALTVVISIMAGVASAVLGTVLGVALAMSRGVWAG 60 Query: 61 LLTLALGFFRAIPVLMLIFWTYFLLPIAFGIDVPGVLSVMFALSLVSAAYLAHSVAAGIA 120 +L LGFFRAIPV+MLIFWTYFLLPI FG+D+P + +V+ AL+L+++AYLAH+V AGI Sbjct: 61 ILAAVLGFFRAIPVIMLIFWTYFLLPIVFGVDIPEITTVVCALALIASAYLAHAVKAGIM 120 Query: 121 GIRSGQWDAGLSLGLPRLHVLRWIVLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELS 180 I +GQW AGLSLG R L +IVLPQAL+MM+PSF+NQW++LIKD+SLAYIVGV EL+ Sbjct: 121 AIGAGQWQAGLSLGFNRWQTLWFIVLPQALRMMVPSFINQWISLIKDTSLAYIVGVNELT 180 Query: 181 FVASQVNSRLMIYPMEIFMFVGAIYFVLCSALEQFAAWVGRYFHPEAIAARHATHTLKKE 240 F+A+QVN+R M+YPME+F+FV +YFVLC AL+ A + R F P+ H +K + Sbjct: 181 FLATQVNNRSMVYPMEVFLFVALVYFVLCLALDLLANGLNRRFSPQ--------HAIKNQ 232 Query: 241 PENXKDASGKCD 252 + C+ Sbjct: 233 SSMARSWRWWCN 244 >PA2202 [E] COG0765 ABC-type amino acid transport system, permease component Pae Pseudomonas aeruginosa Length = 225 Score = 240 bits (612), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 137/213 (64%), Positives = 173/213 (81%) Query: 1 MEFAVLLDNLPYLLWGSYPDGPLGGAALTLLLSIGSALLSALLGVVFGVVLAMSSGAVRK 60 M+F+V+ DNL YLL G+YPDGPLGGAALTLLL+ S L SA+LG+V GV LA+ G R Sbjct: 1 MDFSVISDNLSYLLLGAYPDGPLGGAALTLLLASLSGLASAVLGLVLGVALAVLPGKPRL 60 Query: 61 LLTLALGFFRAIPVLMLIFWTYFLLPIAFGIDVPGVLSVMFALSLVSAAYLAHSVAAGIA 120 LL LGFFRAIPVLMLIFWTYFLLPI F +DVP + +V+ ALSL+ AYLAHSV AGI Sbjct: 61 LLVALLGFFRAIPVLMLIFWTYFLLPIVFHVDVPALATVVCALSLIGGAYLAHSVYAGIH 120 Query: 121 GIRSGQWDAGLSLGLPRLHVLRWIVLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELS 180 + +GQW A +LGL VLR ++LPQAL +MLPSF+NQWV+LIKD+SLAY++GVGELS Sbjct: 121 SLPAGQWAAARALGLRPWQVLRLVILPQALPVMLPSFLNQWVSLIKDTSLAYVIGVGELS 180 Query: 181 FVASQVNSRLMIYPMEIFMFVGAIYFVLCSALE 213 FVA+QV++R+M++P EIF+FV +YF+LC++L+ Sbjct: 181 FVATQVSNRVMVHPTEIFLFVALLYFLLCTSLD 213 >PA4193 [E] COG0765 ABC-type amino acid transport system, permease component Pae Pseudomonas aeruginosa Length = 234 Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/210 (44%), Positives = 137/210 (65%) Query: 12 YLLWGSYPDGPLGGAALTLLLSIGSALLSALLGVVFGVVLAMSSGAVRKLLTLALGFFRA 71 Y L G YP+GPLGG ALTL+L+ + LL+ LG++ G+ +R +T + R Sbjct: 13 YFLVGQYPNGPLGGLALTLVLASLALLLALPLGILLGLARVSPWRWLRWPVTALVFVVRG 72 Query: 72 IPVLMLIFWTYFLLPIAFGIDVPGVLSVMFALSLVSAAYLAHSVAAGIAGIRSGQWDAGL 131 +P+LM+IFW YF LP G +++ AL L A YLA V AGI G+ GQ++A Sbjct: 73 VPLLMVIFWAYFFLPTLTGQRTDQFTTMLLALVLFDAVYLAEIVRAGIQGLDRGQFEAAR 132 Query: 132 SLGLPRLHVLRWIVLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELSFVASQVNSRLM 191 SLGL L +R +VLPQAL+ MLPS VNQ+V+ IK++SL YI+G+ E+SF+ASQ+N+++ Sbjct: 133 SLGLGYLASMRLVVLPQALRNMLPSLVNQFVSTIKETSLGYIIGLAEVSFIASQINTQVF 192 Query: 192 IYPMEIFMFVGAIYFVLCSALEQFAAWVGR 221 P ++++ +G YF+LC L +FA W+ R Sbjct: 193 TLPTQVYLILGLTYFILCFGLSRFAFWLER 222 >RSp0933 [E] COG0765 ABC-type amino acid transport system, permease component Rso Ralstonia solanacearum Length = 248 Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 136/235 (57%), Gaps = 5/235 (2%) Query: 8 DNLPYLLWGSYPDGPLGGAALTLLLSIGSALLSALLGVVFGVVLAMSSGAVRKLLTLALG 67 DN LL G YP+GPLGG A TL+LS+ +L+ L V+ + A+R ++T + Sbjct: 10 DNWLLLLVGQYPNGPLGGIACTLILSVLGIVLAFPLSVLLALARLSPWSALRSVVTALVY 69 Query: 68 FFRAIPVLMLIFWTYFLLPIAFGIDVPGVLSVMFALSLVSAAYLAHSVAAGIAGIRSGQW 127 R +P+LMLI W YFL+P+ G DV G +++ L + YL+ V AGI + GQ Sbjct: 70 GVRGVPLLMLILWVYFLVPLFIGRDVSGFTTMLCTLVIYEGVYLSEVVRAGIEALPKGQM 129 Query: 128 DAGLSLGLPRLHVLRWIVLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELSFVASQVN 187 +A +LG L +R ++LPQAL MLPS + Q+V+ IK+++L Y++ V EL+F A+Q+N Sbjct: 130 EAARALGHSYLGAMRVVILPQALYNMLPSMLAQFVSTIKETTLGYVINVPELTFAANQIN 189 Query: 188 SRLMIYPMEIFMFVGAIYFVLCSALEQFAAWVGRYFHPEAIAARHATHTLKKEPE 242 + L+ P +IF + IYF +C +L + A R IAA+ A PE Sbjct: 190 NALLSKPFQIFFLLAVIYFAVCWSLTRAA----RALE-HRIAAKRAGKRRVPAPE 239 >AGl1163 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 252 Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 142/251 (56%), Gaps = 9/251 (3%) Query: 4 AVLLDNLPYLLWGSYPDGPLGGAALTLLLSIGSALLSALLGVVFGVVLAMSSGAVRKLLT 63 A+L D LL G YP+GPLGG A TL+LS + L+ + ++ + +S+ V +L Sbjct: 7 AILHDYWLLLLIGQYPNGPLGGLANTLILSALAIALAFPVSILMALA-RLSTWRVLRLPV 65 Query: 64 LALGFF-RAIPVLMLIFWTYFLLPIAFGIDVPGVLSVMFALSLVSAAYLAHSVAAGIAGI 122 AL + R +P+LMLI WTYFL+P+ G DVP ++ L + A+L+ V AGI + Sbjct: 66 TALVYVTRGVPLLMLILWTYFLIPLWTGADVPSFAIMLATLVVYQGAFLSEVVRAGIVAL 125 Query: 123 RSGQWDAGLSLGLPRLHVLRWIVLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELSFV 182 GQ DA +LG +R+I+LPQAL M+PS ++ +V IKD++L Y++ V +L+F Sbjct: 126 GVGQMDAAKALGHSYGSAMRFIILPQALYNMIPSMISTFVATIKDTTLGYVINVPDLTFA 185 Query: 183 ASQVNSRLMIYPMEIFMFVGAIYFVLCSALEQFAAWVGRYFHPEAIAARHATHTLKKEPE 242 ASQVN++L+ P ++F+ + +Y+ LC +L A V R IA R A L P Sbjct: 186 ASQVNNQLLTQPFQVFLILAVVYYALCWSLTYLANAVER-----RIARRRA--GLVSRPH 238 Query: 243 NXKDASGKCDT 253 K T Sbjct: 239 QASLTQAKILT 249