BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0174.p (201 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc00265 [G] COG1638 TRAP-type C4-dicarboxylate transport system... 224 1e-58 AGl115 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ... 216 3e-56 SMc00271 [G] COG1638 TRAP-type C4-dicarboxylate transport system... 110 3e-24 FN1258 [G] COG1638 TRAP-type C4-dicarboxylate transport system, ... 107 2e-23 AGl3305 [G] COG1638 TRAP-type C4-dicarboxylate transport system,... 101 1e-21 >SMc00265 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Sme Sinorhizobium meliloti Length = 336 Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 11/209 (5%) Query: 1 MDGPLGKHIQAAFLKSNLIAFDKMWDNGFRQALSSAKPIRTPEDFKAFKIRVPPSPLWTS 60 MDG LG + + K L+ +K+WDNGFRQ SS KPI TPED K FKIRVPPSPLW S Sbjct: 124 MDGELGAYARGEIEKKGLVPMEKIWDNGFRQITSSNKPINTPEDLKGFKIRVPPSPLWQS 183 Query: 61 LFKSLGAAPVSIPWAETYSALQTRMADGIENALATIYFSKMYEISKHLSYTNHMWDGFWM 120 +F + GAAP +I +AE Y+AL T DG EN LA +K+YE+ KH + TNHMWDGFWM Sbjct: 184 MFTAFGAAPTTINFAEVYTALSTGTVDGQENPLAIASTAKLYEVQKHCAMTNHMWDGFWM 243 Query: 121 -----------XRARDIVVKVMNEAAVKQRTDVEKLNGELAGNLGTKGVQFTKVDRAPFQ 169 R+I K +NE+A+ QRTD K+N + L G+ FT D+A F+ Sbjct: 244 LANKQAWETLPEDIREIAAKHLNESAIAQRTDTAKVNDTVREQLTQSGMTFTDPDKAAFR 303 Query: 170 EKLRQAGFYGEWKRRMGDEAWSLLEATTG 198 E LR AGFY EWK + GDEAW++LE G Sbjct: 304 ETLRSAGFYAEWKGKFGDEAWAILEKAVG 332 >AGl115 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 347 Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 105/209 (50%), Positives = 138/209 (66%), Gaps = 11/209 (5%) Query: 1 MDGPLGKHIQAAFLKSNLIAFDKMWDNGFRQALSSAKPIRTPEDFKAFKIRVPPSPLWTS 60 MDG LGK+++ K NL+A D +WDNGFRQ S++KPI TP D ++FKIRVP SPLWTS Sbjct: 135 MDGDLGKYVRGEIAKQNLVAMDTIWDNGFRQITSASKPIATPADLESFKIRVPVSPLWTS 194 Query: 61 LFKSLGAAPVSIPWAETYSALQTRMADGIENALATIYFSKMYEISKHLSYTNHMWDGFWM 120 +FK+ +AP SI +AE Y+ALQT + DG EN LA I +K++E+ K S TNHMWDGFW Sbjct: 195 MFKAFKSAPASINFAEVYTALQTGVVDGQENPLAIISTAKLFEVQKFCSVTNHMWDGFWF 254 Query: 121 ---XRA--------RDIVVKVMNEAAVKQRTDVEKLNGELAGNLGTKGVQFTKVDRAPFQ 169 RA R IV K +N++ +R DV KLN + +L +KG+ F D F+ Sbjct: 255 LANKRAWERLPDDLRAIVAKNLNQSGKDERADVAKLNASVKEDLISKGMTFNDTDATLFR 314 Query: 170 EKLRQAGFYGEWKRRMGDEAWSLLEATTG 198 L++AGFY EWK + GDEAW++LE G Sbjct: 315 AALKEAGFYSEWKGKYGDEAWAILEKAVG 343 >SMc00271 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Sme Sinorhizobium meliloti Length = 325 Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 96/198 (48%), Gaps = 14/198 (7%) Query: 1 MDGPLGKHIQAAFLKSNLIAFDKMWDNGFRQALSSAKPIRTPEDFKAFKIRVPPSPLWTS 60 MDGP+G I AA + L+ W+NG R+ +S + I P D KIR PP + Sbjct: 116 MDGPVGDKIAAAAEQQGLVVL-AWWNNGIRETSNSKRQITAPSDLAGMKIRTPPDQMTVD 174 Query: 61 LFKSLGAAPVSIPWAETYSALQTRMADGIENALATIYFSKMYEISKHLSYTNHMWDGF-- 118 +F +LGA+P + ++E Y ALQ + DG EN L I+ SK++E+ ++S TNH ++ Sbjct: 175 IFTALGASPTPMAFSELYIALQQGVVDGQENPLINIHSSKLHEVQPYISMTNHKYESTPF 234 Query: 119 ---------WMXRARDIVVKVMNEAAVKQRTDVEKLNGELAGNLGTKGVQFTKVDRAPFQ 169 + + I+ EA R V + L G L GV+ VD APF Sbjct: 235 LASKIVFDALLPEDQQIIRDAAREAGQLNRQMVGEQTTRLRGELEAAGVKINDVDPAPFV 294 Query: 170 EKLRQAGFYGEWKRRMGD 187 + + Y +W+ + D Sbjct: 295 QATQ--SVYDKWRAQYPD 310 >FN1258 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Fnu Fusobacterium nucleatum Length = 333 Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 92/177 (51%), Gaps = 14/177 (7%) Query: 4 PLGKHIQAAFLKSNLIAFDKMWDNGFRQALSSAKPIRTPEDFKAFKIRVPPSPLWTSLFK 63 PL + + A L+ + W GFR + + KPI+TPED K K+RVP S L+T + Sbjct: 122 PLVQDLNAQALEKGIKVLSLDWLFGFRN-IEAKKPIKTPEDMKGLKLRVPTSQLYTFTIE 180 Query: 64 SLGAAPVSIPWAETYSALQTRMADGIENALATIYFSKMYEISKHLSYTNHM--------- 114 ++G PV++P+ +TY+ALQ + DG+E ++ + Y +K YE K S T H+ Sbjct: 181 AMGGNPVAMPYPDTYAALQQGVIDGLEGSILSFYGTKQYENVKEYSLTRHLLGVSAVCIS 240 Query: 115 ---WDGFWMXRARDIVVKVMNEAAVKQRTDVEKLNGELAGNLGTKGVQFTKVDRAPF 168 WD R I+ + ++ A+ T+ EKL E A L GV F +VD F Sbjct: 241 KKCWDSL-TDEQRTIIQEEFDKGALDNLTETEKLEDEYAQKLKDNGVTFHEVDAEAF 296 >AGl3305 [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 341 Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 1 MDGPLGKHIQAAFLKSNLIAFDKMWDNGFRQALSSAKPIRTPEDFKAFKIRVPPSPLWTS 60 +D LGK + K ++ D +W RQ +S PI++P D K K+RVP +PLW Sbjct: 130 LDSELGKELSGDLSKIGILGLD-LWSRPLRQITNSKAPIKSPVDLKGMKLRVPNNPLWVE 188 Query: 61 LFKSLGAAPVSIPWAETYSALQTRMADGIENALATIYFSKMYEISKHLSYTNHMWDG 117 F ++GAAP + +AE Y+ALQ ++ DG EN + +K+YE+ K+L+ +NH+ D Sbjct: 189 FFGAMGAAPTPMAFAEVYNALQLKVVDGQENPVNVPVSAKLYEVQKYLTISNHIADA 245