BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0165.p         (158 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1547 [K] COG1846 Transcriptional regulators Sty Salmonella ty...   214   6e-56
AGpA607 [K] COG1846 Transcriptional regulators Atu Agrobacterium...    91   7e-19

>STM1547 [K] COG1846 Transcriptional regulators Sty Salmonella typhimurium
           LT2
          Length = 162

 Score =  214 bits (545), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 102/152 (67%), Positives = 125/152 (82%)

Query: 2   NKNVQDTHISSQLKILHGALISIASAMNRPQRDEAMIREAGIPLDRALFPLLVGIEKLGP 61
           NKNVQDTHIS Q+K LHGALI + SA+NRP+ DE +I EAGI LDRALF +L+ IE+LGP
Sbjct: 4   NKNVQDTHISEQMKALHGALIRVVSALNRPRNDEKLIAEAGIQLDRALFSILISIERLGP 63

Query: 62  IGVVEIADRVGRDYTTVSRQVSKLEELGLVRRESSAADRRIRMASVTAKGKAMTELVDAA 121
           IGVVE+A+R GRDYTTVSRQV+KLE+LGL+ R+ +A DRRIR A ++  GKAMTE +DAA
Sbjct: 64  IGVVELAERAGRDYTTVSRQVAKLEKLGLIIRQHNAIDRRIREAVISRTGKAMTERIDAA 123

Query: 122 RERMGRKIFASWEQTEMDDLVRLMRKFADALD 153
           RE+MG  +F  W Q E+D  VRLM+KFADA+D
Sbjct: 124 REQMGNVVFKDWPQDELDVFVRLMQKFADAMD 155


>AGpA607 [K] COG1846 Transcriptional regulators Atu Agrobacterium
          tumefaciens strain C58 (Cereon)
          Length = 57

 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/57 (77%), Positives = 49/57 (85%)

Query: 37 MIREAGIPLDRALFPLLVGIEKLGPIGVVEIADRVGRDYTTVSRQVSKLEELGLVRR 93
          M+RE GI LDRALFPL V IE+LGP G+V++ADRVGRDYTTVSRQVSKLEE GL  R
Sbjct: 1  MVREVGIALDRALFPLPVMIERLGPTGIVDLADRVGRDYTTVSRQVSKLEEFGLATR 57