BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0162.p (618 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc00266_2 [G] COG1593 TRAP-type C4-dicarboxylate transport syst... 459 e-128 AGl113_2 [G] COG1593 TRAP-type C4-dicarboxylate transport system... 421 e-117 AGl3348 [G] COG1593 TRAP-type C4-dicarboxylate transport system,... 209 1e-53 SMb21436 [G] COG1593 TRAP-type C4-dicarboxylate transport system... 206 1e-52 SMb21351 [G] COG1593 TRAP-type C4-dicarboxylate transport system... 202 1e-51 >SMc00266_2 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component Sme Sinorhizobium meliloti Length = 419 Score = 459 bits (1180), Expect = e-128, Method: Compositional matrix adjust. Identities = 240/406 (59%), Positives = 316/406 (77%), Gaps = 1/406 (0%) Query: 214 LGIPIAFCFGLATVAFMLTVTSSPLAVVAGRFDEGMSSLILLAVPLFILLGHLVEMTGMA 273 +G+PIAFCFG+AT+ F+ TS PL V+ GR DEGMSSLILL+VP+F+LLG +++ TGM Sbjct: 14 MGVPIAFCFGIATLLFLAFTTSMPLVVMIGRMDEGMSSLILLSVPVFVLLGCILDATGMG 73 Query: 274 KAMVDFLASLVGHVRGGLNYVLLGAMLLVSGISGAKTADMAAVAPVLLPEMKRRGNHEGE 333 KA+VDFLAS++GHV+ G++YVLLG++ LVSGISG+K +DMA VAP L PEMKRRG+ E Sbjct: 74 KAIVDFLASMLGHVKAGMSYVLLGSLFLVSGISGSKVSDMATVAPALFPEMKRRGHKPKE 133 Query: 334 LISLLAASGAMAETIPPSLVLITIGSVAGVSIAALFTGGIMPGIVLAVLLAILARFRSA- 392 +I+LLA AMA+T+PPS+VLI +GSVAGVSIAALFT G +VL V LA LAR ++A Sbjct: 134 MIALLATGAAMADTVPPSIVLIVLGSVAGVSIAALFTSGFAIALVLLVALAALARIKAAR 193 Query: 393 EIMDGYQRAPGKVVLRTLAIALPALLLPILIRTAVVEGVATATEVSTIGIAYAVVAGLLI 452 E +DG R K + T IA PAL+LP +IR+AV G ATATEVSTI + YA + G ++ Sbjct: 194 ENVDGVVRPSLKRIGGTALIAAPALVLPFIIRSAVASGAATATEVSTIAVVYAFIIGTVL 253 Query: 453 YRRFDWKRIYPMLVDTAALSGAILFIIGTATGMSWALTQSGFSHSLAEAMTSVPGGKYGF 512 Y +R Y MLV+TAA+SGAIL I+GTA M+WALTQ+GF+ L + M+ +PGG + F Sbjct: 254 YGGIGMRRTYRMLVETAAMSGAILLILGTAAAMAWALTQTGFAFELTDMMSGLPGGWFTF 313 Query: 513 LLVSIAAFIVLGSVLEGIPAMVLFAPLLFPVAKAIGVHEVHYAMVIILSMGVGLFAPPFG 572 +LVSIA F++LG VLEG+PA+VL AP++FP+A+A+G+H+VHY+MVI+ +M VGL APP G Sbjct: 314 MLVSIALFMLLGCVLEGLPAIVLLAPIMFPIARAMGIHDVHYSMVIVTAMNVGLMAPPIG 373 Query: 573 LGYYAACTIGRVHPDVAVRRIWPYLGILVIGLLIVAFVPWFSIGFL 618 +G+Y AC IG V PD A+ IWPY+G +V+GLL++A VPWFS+ L Sbjct: 374 IGFYIACKIGNVSPDEAMGAIWPYIGAMVLGLLLIAAVPWFSLALL 419 >AGl113_2 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 403 Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust. Identities = 218/399 (54%), Positives = 304/399 (76%), Gaps = 1/399 (0%) Query: 217 PIAFCFGLATVAFMLTVTSSPLAVVAGRFDEGMSSLILLAVPLFILLGHLVEMTGMAKAM 276 PIAFCFGL T+A++ T P V+ GR DEGMS +ILL+VP+F+LLG +++ TGM KA+ Sbjct: 1 PIAFCFGLGTLAYLTFTTWVPTIVMIGRMDEGMSGIILLSVPVFVLLGCVLDATGMGKAI 60 Query: 277 VDFLASLVGHVRGGLNYVLLGAMLLVSGISGAKTADMAAVAPVLLPEMKRRGNHEGELIS 336 V+ L+S+ GH+R G++YVLLG++ LVSGISG+K +DMA VAP L PEMKRRG+ E+I+ Sbjct: 61 VELLSSMFGHIRAGMSYVLLGSLFLVSGISGSKVSDMATVAPALFPEMKRRGHKPKEMIA 120 Query: 337 LLAASGAMAETIPPSLVLITIGSVAGVSIAALFTGGIMPGIVLAVLLAILARFRS-AEIM 395 LLA AMA+T+PPS+VLI +GS AGVSIA LFT G M +VL ++LA+LAR+++ E M Sbjct: 121 LLATGAAMADTVPPSIVLIVLGSAAGVSIAGLFTSGFMIAMVLLLVLAVLARWKARDENM 180 Query: 396 DGYQRAPGKVVLRTLAIALPALLLPILIRTAVVEGVATATEVSTIGIAYAVVAGLLIYRR 455 +G +R P V + IA PAL+LP LIR+ V GVATATEVSTI + YA++ G ++Y Sbjct: 181 EGAKRTPWPQVGKAALIAAPALVLPFLIRSLVGGGVATATEVSTIAVLYAMIVGAVLYGG 240 Query: 456 FDWKRIYPMLVDTAALSGAILFIIGTATGMSWALTQSGFSHSLAEAMTSVPGGKYGFLLV 515 +++Y MLV+TAALSGAIL I+G A+ M+W LTQSGF+ L +T +PGG +++V Sbjct: 241 ISLRKLYSMLVETAALSGAILLILGCASAMAWGLTQSGFAFQLTAMITDLPGGWMTYMVV 300 Query: 516 SIAAFIVLGSVLEGIPAMVLFAPLLFPVAKAIGVHEVHYAMVIILSMGVGLFAPPFGLGY 575 SI F++LG VLEG+PA+VL AP++FP+A+ +G++++HY+MV++++M +GL APP G+G+ Sbjct: 301 SILIFMILGCVLEGLPAIVLLAPIMFPIARTLGINDIHYSMVVVVAMNIGLMAPPIGIGF 360 Query: 576 YAACTIGRVHPDVAVRRIWPYLGILVIGLLIVAFVPWFS 614 Y AC IG V PD A+ IWPYL ++IGLL++A +P FS Sbjct: 361 YIACKIGNVSPDEAMGAIWPYLAAMIIGLLLIAAIPGFS 399 >AGl3348 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 426 Score = 209 bits (533), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 141/420 (33%), Positives = 231/420 (55%), Gaps = 11/420 (2%) Query: 202 IFFGLLLGMSVLLGIPIAFCFGLATVAFMLTVTSSPLAVVAGRFDEGMSSLILLAVPLFI 261 I FG+ + +L+G PIAFC G+A+ A +L + P+ VV + + GM+ ++A+P FI Sbjct: 5 ILFGVFT-LLMLIGTPIAFCLGIASFATVLYLGLPPI-VVFQQMNSGMNVFAMMAIPFFI 62 Query: 262 LLGHLVEMTGMAKAMVDFLASLVGHVRGGLNYVLLGAMLLVSGISGAKTADMAAVAPVLL 321 G L+ G+A ++ F A LVGH+RGGL V + A L GISG+ AD +AV +++ Sbjct: 63 FAGDLMVRGGIAHRLIRFAAGLVGHLRGGLGQVNIVASTLFGGISGSAVADASAVGGLMI 122 Query: 322 PEMKRRGNHEGELISLLAASGAMAETIPPS--LVLITIGSVAGVSIAALFTGGIMPGIVL 379 P+M +RG + +++ + +A IPPS ++L +I + VS+A LFT GI+PG++L Sbjct: 123 PQMAKRGYDKDYAVNVTVNAAIIALMIPPSHNMILYSIAAGGNVSVADLFTAGIIPGLLL 182 Query: 380 AVLLAILARFRSAEIMDGYQRAP----GKVVLRTLAIALPALLLPILIRTAVVEGVATAT 435 A L + A + GY P K++ LA + P +LL +I V G+ TAT Sbjct: 183 AAALMVTAYIVARR--KGYPSEPFPGFSKLMYYLLA-SFPGILLIGIIFGGVRSGIFTAT 239 Query: 436 EVSTIGIAYAVVAGLLIYRRFDWKRIYPMLVDTAALSGAILFIIGTATGMSWALTQSGFS 495 E S I + YA + +L+YR +W ++ + +L +IGTA W + Sbjct: 240 ESSCIAVLYAFLVAMLVYRELNWDGFVEAVMGAVRTTAMVLLVIGTAASFGWLMAFLQVQ 299 Query: 496 HSLAEAMTSVPGGKYGFLLVSIAAFIVLGSVLEGIPAMVLFAPLLFPVAKAIGVHEVHYA 555 + A++++ LLV ++LG+ ++ P +++ P+L PV KA G+ VH+ Sbjct: 300 TLMIAAISAISDNPIIVLLVINVILLLLGTFMDMAPMVIISTPVLLPVVKAFGIDPVHFG 359 Query: 556 MVIILSMGVGLFAPPFGLGYYAACTIGRVHPDVAVRRIWPYLGILVIGLLIVAFVPWFSI 615 +V+IL+ G+GL PP G + C +G + A+R IWP+ G + LL V ++P S+ Sbjct: 360 VVMILNAGIGLNTPPVGTVLFVGCAVGGITIREAMRTIWPFFGASIAVLLAVTYIPSLSL 419 >SMb21436 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component Sme Sinorhizobium meliloti Length = 426 Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/403 (32%), Positives = 225/403 (55%), Gaps = 5/403 (1%) Query: 212 VLLGIPIAFCFGLATVAFMLTVTSSPLAVVAGRFDEGMSSLILLAVPLFILLGHLVEMTG 271 +L+ PIA L++VA++L PL VVA R G+ S LLA+PLF+L G L+ G Sbjct: 16 LLIDAPIAIALALSSVAYLLVGDVLPLMVVAQRMVAGIDSFTLLAIPLFLLAGLLMVHGG 75 Query: 272 MAKAMVDFLASLVGHVRGGLNYVLLGAMLLVSGISGAKTADMAAVAPVLLPEMKRRGNHE 331 +A +V+ A++VG GGL V++ A ++ +SG+ AD+ A+ +LLP MK RG H Sbjct: 76 LAPRIVNLCAAVVGQRTGGLAIVMIAACMMFGSLSGSGVADVVAIGSMLLPAMKERGYHP 135 Query: 332 GELISLLAASGAMAETIPPSLVLITIGSVAGVSIAALFTGGIMPGIVLAVLLAILARFRS 391 G + L +G++ IPPS+VLI G+ G SI LF I PGI+L L ++A + S Sbjct: 136 GFSAAGLGCAGSLGTVIPPSIVLIVYGTATGTSIGQLFIHSIGPGILLGFGLMVVAWWIS 195 Query: 392 AEIMDGYQRAPGKVVLR---TLAIALPALLLPILIRTAVVEGVATATEVSTIGIAYAVVA 448 + +G++ R L ++ ALL P++I + G+ T TE + IG+AYA++ Sbjct: 196 RK--NGWKGGEPFSWTRLGTALRESVLALLAPVIIVGGIRFGIFTPTEAAGIGVAYALLV 253 Query: 449 GLLIYRRFDWKRIYPMLVDTAALSGAILFIIGTATGMSWALTQSGFSHSLAEAMTSVPGG 508 G LIYR+ +++ +L DT ++G+IL +I A+ W LT + A+T Sbjct: 254 GALIYRQLTLAKVFSLLRDTTEMTGSILIVIAAASVFGWILTVEQVPQLVVNAITGATES 313 Query: 509 KYGFLLVSIAAFIVLGSVLEGIPAMVLFAPLLFPVAKAIGVHEVHYAMVIILSMGVGLFA 568 L++ + A +VLG+ +E I +++ AP+ PV + + V++ +++ +++ +G Sbjct: 314 ATVALMLMMVAVLVLGTFMESIAIILILAPVFLPVLRVFEIDPVYFGVLLTINLAIGANT 373 Query: 569 PPFGLGYYAACTIGRVHPDVAVRRIWPYLGILVIGLLIVAFVP 611 PP G+ AAC G + + R + P++G++ + + ++ P Sbjct: 374 PPLGIDLMAACRTGGIPMSASFRYLLPFIGVMALIMFLLVLFP 416 >SMb21351 [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component Sme Sinorhizobium meliloti Length = 427 Score = 202 bits (515), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 150/427 (35%), Positives = 236/427 (55%), Gaps = 19/427 (4%) Query: 199 NLVIFFGLLLGMSVLLGIPIAFCFGLATVAFMLTVTSSPLAVVAGRFDEGMSSLILLAVP 258 +++I FG+ + +L+G PIAFC G+A+ A +L + PL V+ R + GMS LLA+P Sbjct: 2 DMMILFGVFT-LLMLIGTPIAFCLGVASFATVLYLGLPPL-VIFQRLNSGMSVFSLLAIP 59 Query: 259 LFILLGHLVEMTGMAKAMVDFLASLVGHVRGGLNYVLLGAMLLVSGISGAKTADMAAVAP 318 FI G L+ G+A+ +V F ASLVGH+RGGL V + L GISG+ A+ AAV Sbjct: 60 FFIYAGDLMVRGGIAQKIVAFAASLVGHIRGGLGQVNIVTATLFGGISGSAVAEAAAVGG 119 Query: 319 VLLPEMKRRGNHEGELISLLAASGAMAETIPPS--LVLITIGSVAGVSIAALFTGGIMPG 376 +++P+MK+RG +++ + + +A +PPS +++ +I + +SIA LFT GI+PG Sbjct: 120 LMIPQMKQRGYGADYAVNVTSMAALIALMLPPSHNMIIYSISAGGKISIADLFTAGILPG 179 Query: 377 IVLAVLLAILARF------RSAEIMDGYQRAPGKVVLRTLAIALPALLLPILIRTAVVEG 430 ++ A L A F E+ G+ R V R L I+ P LLL +I V G Sbjct: 180 LLYAAALMATAYFVARRRGYPTEVFPGFAR-----VGRYLLISTPGLLLIGIIFGGVRSG 234 Query: 431 VATATEVSTIGIAYAVVAGLLIYRRFDWKRIYPMLVDTAALSGAILFIIGTATGMSWALT 490 V TATE S I + YA+ + +YR+ W+ + +L IIG A SW + Sbjct: 235 VFTATESSCIAVLYALAVTVFVYRQMTWQDFVQATFAAVRTTAMVLLIIGMAAAFSWLMA 294 Query: 491 QSGFSHSLAEAMTSVPGGKYGFLLVSIAAFIVLGSVLEGIPAMVLFAPLLFPVAKAIGVH 550 +L + M ++ LL+ + LG+ ++ P +++ P+ PVA A GV Sbjct: 295 FLRVPAALIDWMNTISENPIIILLLLNVLMLFLGTFMDMGPTIIICTPIFLPVAMAYGVD 354 Query: 551 EVHYAMVIILSMGVGLFAPPFGLGYYAACTIGRVHPDVAVRRIWPYL--GILVIGLLIVA 608 VH+ +++IL+ G+GL PP G + AC +G++ A+R IWP+ G++V+GL V Sbjct: 355 PVHFGVIMILNFGIGLNTPPVGAVQFVACAVGKISVWEAMRSIWPFYLAGLIVLGL--VT 412 Query: 609 FVPWFSI 615 +VP S+ Sbjct: 413 YVPALSL 419