BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0157.p (294 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value perR [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 186 5e-47 AGl3310 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 181 2e-45 CC1117 Non COG 166 5e-41 SMc00275 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 162 1e-39 mlr5771 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 147 3e-35 >perR [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 297 Score = 186 bits (473), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 112/294 (38%), Positives = 157/294 (53%), Gaps = 4/294 (1%) Query: 1 MAALPPIPNLQAFEAVARRRSFALAAGELHLTASAVSHQVARLESYLGVRLFERSAHGVH 60 + A P+ L+AFEA R +FALAA EL L+ SA+SH + +LE+ L VRLF+RS + Sbjct: 3 LLAKAPLNLLRAFEAAGRTGAFALAASELELSPSAISHAIRKLENLLDVRLFQRSTREIT 62 Query: 61 ISAAGESYLARIQGAISAITAASMDVKHGVSNSLYIHSAPSIASLWLMERLNGFARAYPD 120 ++ GE L IQ + + V S L +H+APS A WL+ RL F R P Sbjct: 63 LTKEGEILLEHIQRGFNELQQGLALVTADESRPLRLHTAPSFAHQWLLPRLGKFIRENPS 122 Query: 121 ISFNLSAAHTPSNFELGEVDIDIRYGIPNWPGLQVEPLFEERIVPLASPEFIRQNKLKKP 180 I LSA+ + FE + D+DI YG P + PL E + PL SP+ +LKKP Sbjct: 123 IDLRLSASTEYARFEQDDFDLDIVYGEPRPSPYEKIPLAVEELTPLCSPQL--AERLKKP 180 Query: 181 EDLLRVRLIRSNVSVVQWPDWFAIYSPLRTPNQFAVRFDRAQMSLDAATQGLGVALESTT 240 EDL + LI+ +V + QW WF + + PN + +RFDR+ M++ AA GLGV LES Sbjct: 181 EDLYALTLIQCDVQLYQWKGWFEA-NKMTPPNNYGLRFDRSFMAIAAAVDGLGVVLESKL 239 Query: 241 VAGRHIRERQL-KPVFGLEQCIKVKAHFAVYPARHIKRPAVEAFLGWLREQAAL 293 +A R I +L P+ I H+ V+P A++ F WL + L Sbjct: 240 LAEREIASGKLVCPLVNSTSEIHYIGHYLVFPQHQHMHSALDVFKTWLLNELNL 293 >AGl3310 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 298 Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 105/286 (36%), Positives = 155/286 (54%), Gaps = 2/286 (0%) Query: 6 PIPNLQAFEAVARRRSFALAAGELHLTASAVSHQVARLESYLGVRLFERSAHGVHISAAG 65 PI ++ F A AR S + AA EL +T SAVS Q+ LE LG L R+ V ++ AG Sbjct: 4 PIKSILVFHAAARAGSISRAAEELSVTPSAVSQQIQLLEGQLGTTLMARTGRKVTLTEAG 63 Query: 66 ESYLARIQGAISAITAASMDVKHGVS-NSLYIHSAPSIASLWLMERLNGFARAYPDISFN 124 E Y + I I I+ A+ ++ S +L I + P+I++ WL+ RL F +P++ Sbjct: 64 ERYFSMITAQIEQISDATDSIRGFRSVTTLTIRATPTISNKWLLPRLGSFLEEHPELEVR 123 Query: 125 LSAAHTPSNFELGEVDIDIRYGIPNWPGLQVEPLFEERIVPLASPEFIRQNKLKKPEDLL 184 L + P++F VDI++R+G WPGL VE L EE +P+ SP + K PE+L Sbjct: 124 LDGTNEPTDFSQELVDIELRHGDGRWPGLFVEGLVEEEFLPVCSPNYQGAGKFL-PEELQ 182 Query: 185 RVRLIRSNVSVVQWPDWFAIYSPLRTPNQFAVRFDRAQMSLDAATQGLGVALESTTVAGR 244 RLI S + QW WF + V FDR+ M++DAA G+GVALEST + R Sbjct: 183 NERLIHSVKAQAQWNHWFPLAGVTAEKRWRRVLFDRSHMAIDAAVLGIGVALESTLMMER 242 Query: 245 HIRERQLKPVFGLEQCIKVKAHFAVYPARHIKRPAVEAFLGWLREQ 290 ++++ L P IK+ + V P H+++ V FL W+R+Q Sbjct: 243 ELQDKMLVPAVADAPRIKLVTQWIVCPHSHLRQRKVMLFLEWMRKQ 288 >CC1117 Non COG Length = 340 Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 104/292 (35%), Positives = 159/292 (54%), Gaps = 9/292 (3%) Query: 4 LPPIPNLQAFEAVARRRSFALAAGELHLTASAVSHQVARLESYLGVRLFERSAHGVHISA 63 LPP+ L+AFEA AR +F+ AA EL +T AVS Q+ LE Y+G LF+R+ G+ ++ Sbjct: 32 LPPLNALRAFEAAARHLNFSRAADELSVTPGAVSQQIQNLEDYVGAALFKRTPKGLLLTD 91 Query: 64 AGESYLARIQGAISAITAASMDVKHGVSNS-LYIHSAPSIASLWLMERLNGFARAYPDIS 122 A ++ L ++ A + A+ + V L + +APS A+ WL+ RL F +A+P + Sbjct: 92 AAQTALPALREAFDRLAEAASLLTAAVDGRRLTLTAAPSFAAKWLVPRLGKFEQAHPQVD 151 Query: 123 FNLSAAHTPSNFELGEVDIDIRYGIPNWPGLQVEPLFEERIVPLASPEFIRQNKLKKPED 182 LSA +F GEVD+ IRYG +PGL+V L E +VP+ASPE + QN L++PED Sbjct: 152 VWLSAGMEVVDFATGEVDMAIRYGSGRYPGLEVIRLLHETVVPVASPELLEQNALERPED 211 Query: 183 LLRVRLIR-----SNVSVVQWPDWFAIYSPLRTPNQFAVRFDRAQMSLDAATQGLGVALE 237 L L+ ++ S W W A RF+++ + ++AA G G+AL Sbjct: 212 LQHHILLHDGSPDADDSCPDWAMWLAARGIRGVDGARGPRFNQSSLVIEAAANGRGIALA 271 Query: 238 STTVAGRHIRERQLKPVFGLEQCIKVK-AHFAVYPARHIKRPAVEAFLGWLR 288 T+A + +L V E V A++ V+P + P V+AF+ WL+ Sbjct: 272 KRTLAQADLDSGRL--VIPFEASTAVDFAYYVVHPKAKGRLPQVKAFVNWLK 321 >SMc00275 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 324 Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 99/298 (33%), Positives = 154/298 (51%), Gaps = 11/298 (3%) Query: 4 LPPIPNLQA---FEAVARRRSFALAAGELHLTASAVSHQVARLESYLGVRLFERSAHGVH 60 +P PNL + FEAVAR +LAA EL ++A+AVS Q+ +LE GVRLF R + Sbjct: 1 MPINPNLNSLAYFEAVARTGRVSLAAAELGVSAAAVSQQLKQLEEQWGVRLFRRKDRRLS 60 Query: 61 ISAAGESYLARIQGAISAI-TAASMDVKHGVSNSLYIHSAPSIASLWLMERLNGFARAYP 119 ++ GE A I A S ++ S L + S+PS A WL RL F A P Sbjct: 61 LTIDGELLFQTTTSAFRMIRDARSAVLRQRNSRQLTMRSSPSFAVRWLTPRLKSFLDANP 120 Query: 120 DISFNLSAAHTPSNFELGEVDIDIRYGIPNWPGLQVEPLFEERIVPLASPEFIRQNKLKK 179 D + A S+FE +D+D+RYG W GL+ E + + ++P+ SP++ +++L+ Sbjct: 121 DWGVRVDATPDFSDFETEVIDLDLRYGSGAWEGLRTECIISDFVLPMCSPDY--RDRLRS 178 Query: 180 PED-----LLRVRLIRSNVSVVQWPDWFAIYSPLRTPNQFAVRFDRAQMSLDAATQGLGV 234 D + RLI S ++ QW W +++ Q +RFDR+ M++ A G G+ Sbjct: 179 VSDDPVLQFAQARLIHSVKALYQWDVWLVVHNIDPPTEQAPLRFDRSSMAIQLARDGAGI 238 Query: 235 ALESTTVAGRHIRERQLKPVFGLEQCIKVKAHFAVYPARHIKRPAVEAFLGWLREQAA 292 L+S T+A + L P+ + ++ A++ V P+RHI R V F W+R + Sbjct: 239 VLDSATLAQEELERGSLVPLSTAFEVVEFPAYWIVCPSRHINRRPVRLFTDWIRMEGT 296 >mlr5771 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 331 Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 141/285 (49%), Gaps = 8/285 (2%) Query: 9 NLQAFEAVARRRSFALAAGELHLTASAVSHQVARLESYLGVRLFERSAHGVHISAAGESY 68 ++ FEAVAR A AA EL +T SAVS Q+ LE LGVRLF+R + ++ GE Sbjct: 8 SMTHFEAVARLGGVAKAAQELQVTPSAVSQQLRLLEHQLGVRLFQREKRHLSLTIDGERL 67 Query: 69 LARIQGAISAITAA-SMDVKHGVSNSLYIHSAPSIASLWLMERLNGFARAYPDISFNLSA 127 A +I + V+ S L + +PS WL RL F++ YP S+NL Sbjct: 68 FQTTTQAFESIREVRNAIVRQRESFQLSLRVSPSFGEKWLAPRLAEFSKDYP--SWNLRV 125 Query: 128 AHTP--SNFELGEVDIDIRYGIPNWPGLQVEPLFEERIVPLASPEF---IRQNKLKKPED 182 TP S+FE +D+D+RYG W GL + + + I+P+ SP + +R + E Sbjct: 126 DATPNFSDFETEVIDLDLRYGDGGWAGLYSDCVVNDLILPMCSPSYLAELRGLSVDPREQ 185 Query: 183 LLRVRLIRSNVSVVQWPDWFAIYSPLRTPNQFAVRFDRAQMSLDAATQGLGVALESTTVA 242 L RLI S + +W W + RFDR+ MS+ A G GV LESTT+A Sbjct: 186 LGHARLIDSVKAYFRWDYWLPRNGIQGARMTYPYRFDRSSMSVQLAKDGAGVVLESTTIA 245 Query: 243 GRHIRERQLKPVFGLEQCIKVKAHFAVYPARHIKRPAVEAFLGWL 287 + L PV I+ ++ V P+RH+ R AV F W+ Sbjct: 246 FEDLVSGSLVPVSTEFDVIEFPGYWLVCPSRHMNRRAVRLFSDWV 290